CB610635

Overview
NameCB610635
Unique NameCB610635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length196
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610635 vs. ExPASy Swiss-Prot
Match: ACON_STAAR (Aconitate hydratase OS=Staphylococcus aureus (strain MRSA252) GN=acnA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 2
Query:    5 DIXAVAVLSGNRNFGSXPFPLTRANYLADRSLVVAYALAGTVDIDFEKEPIGTG 166
            D+   +VLSGNRNF     PL +ANYLA   LVVAYALAG+VDID + EPIG G
Sbjct:  531 DLLVTSVLSGNRNFEGRIHPLVKANYLASPQLVVAYALAGSVDIDLQNEPIGKG 584          
BLAST of CB610635 vs. ExPASy Swiss-Prot
Match: ACOC_DICDI (Probable cytoplasmic aconitate hydratase OS=Dictyostelium discoideum GN=aco1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 2
Query:    5 DIXAVAVLSGNRNFGSXPFPLTRANYLADRSLVVAYALAGTVDIDFEKEPIGTGE 169
            D+    VLSGNRNF     PL RANYLA   LVVAYALAGTVDIDFE  P+G  +
Sbjct:  526 DLVVAGVLSGNRNFEGRIHPLLRANYLASPPLVVAYALAGTVDIDFETTPLGVSK 580          
BLAST of CB610635 vs. ExPASy Swiss-Prot
Match: IREB2_CHICK (Iron-responsive element-binding protein 2 OS=Gallus gallus GN=IREB2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 2
Query:    2 GDIXAVAVLSGNRNFGSXPFPLTRANYLADRSLVVAYALAGTVDIDFEKEPIGTG 166
            GDI A  VLSG +NF        RANYLA   LVVAYA+AGTV IDFE EP+GTG
Sbjct:  601 GDIIACGVLSGTKNFEGRLCDCVRANYLASPPLVVAYAIAGTVRIDFETEPLGTG 655          
BLAST of CB610635 vs. ExPASy Swiss-Prot
Match: IREB2_RAT (Iron-responsive element-binding protein 2 OS=Rattus norvegicus GN=Ireb2 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 2
Query:    2 GDIXAVAVLSGNRNFGSXPFPLTRANYLADRSLVVAYALAGTVDIDFEKEPIGT 163
            GD+    VLSGN+NF        RANYLA   LVVAYA+AGTV+IDF+ EP+GT
Sbjct:  599 GDLVTCGVLSGNKNFEGRLCDCVRANYLASPPLVVAYAIAGTVNIDFQTEPLGT 652          
The following BLAST results are available for this feature:
BLAST of CB610635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ACON_STAAR5.234e-1262.96Aconitate hydratase OS=Staphylococcus aureus (stra... [more]
ACOC_DICDI5.234e-1263.64Probable cytoplasmic aconitate hydratase OS=Dictyo... [more]
IREB2_CHICK1.989e-1163.64Iron-responsive element-binding protein 2 OS=Gallu... [more]
IREB2_RAT9.871e-1159.26Iron-responsive element-binding protein 2 OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_C09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610635 ID=CB610635; Name=CB610635; organism=Citrus sinensis; type=EST; length=196bp
GGGTGACATTNNTGCCGTTGCTGTGCTTTCCGGTAATCGGAACTTTGGAT
CNNGTCCCTTTCCTTTGACAAGAGCTAACTATCTTGCAGATCGATCATTA
GTTGTTGCTTATGCCCTTGCTGGCACAGTTGACATAGACTTTGAAAAGGA
GCCAATTGGAACTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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