CB610690

Overview
NameCB610690
Unique NameCB610690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610690_ssr622 microsatellite CB610690_ssr622:622..637. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:251..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.243e-30
Identity = 78/154 (50.65%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  104 RRTNVFDPFSLDVW---DPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            R  NV DP S+D W   DPFG           S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA--------VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 59/134 (44.03%), Postives = 86/134 (64.18%), Query Frame = 2
Query:   98 GGRRTNVFDPFSLDVWDPFGGFLS-SALTNAPSSARDTSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            GG      +P S+D+ +PF   +S +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  224 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  218 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  200 RDTS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 490
            RDTS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  326 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 547
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 2
Query:  116 VFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            +FD  + D W+PF  F ++   +A   A DTS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  122 DPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 490
            DPF +    PFG               D +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   53 DPFRILEHVPFG-----------FDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 2
Query:   77 SLIPSIFGGRRTNVFDPFSLDVWDPFGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            +L+P  +G    + F         P GG  ++A    P++       A AR DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   29 ALVPYGYGYMLDDPFRVLEQSPLRPAGGVAAAAAAGEPAAV------ALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  182 NAPSS--ARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            NAPS    RD    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CB610690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS166_ORYSJ1.243e-3050.6516.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ4.575e-2544.0318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN5.975e-2556.6722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA5.975e-2554.3522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.472e-2352.0422.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.627e-2272.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ3.625e-2244.8817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ3.751e-1941.7323.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ6.398e-1938.1021.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE2.276e-1642.4517.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610690 ID=CB610690; Name=CB610690; organism=Citrus sinensis; type=EST; length=697bp
GGGATCTTCGATTTGATTGATCAAAACACTTCTGAAGTTGTTGAGCATTT
AATTAGCGCTCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGGT
GGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCC
TTTCGGCGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCTA
GGGATACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCCT
CAGGCTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGT
GAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGA
GCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGC
AGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGA
GCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCTA
AACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAA
GTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAAT
TTGGTACGAAAGCAAAGCCCTTGTGTGTGTGTGTGTGTTTGCAAGAGCTT
CCCTTCCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGTTTGCA
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