CB610690

Overview
NameCB610690
Unique NameCB610690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  104 RRTNVFDPFS----LDVWDPFGGFLSSALTNAP--SSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            +RT  +DPF     L  WDPF       L N P  ++ +    F  A  + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPF------ELANHPWFANRQGPPAFVPA-FEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  203 DTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            D    A    D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   46 DARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 45/119 (37.82%), Postives = 60/119 (50.42%), Query Frame = 2
Query:  152 FGGFLSSALTNAPSSARDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 490
            FGG     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  218 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 493
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  182 NAPSSA--RDTSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            N PS    RD    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
BLAST of CB610690 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  182 NAPSSA--RDTSQFANARIDWKE--TPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-----KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            N P+ A  RD    AN  +D KE     A V   D+PG+           G +L ISGER +   + +D     K+ R+ER  GKF+RRF LP++A ++ V+A  ++GVLTVT
Sbjct:   33 NPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145          
The following BLAST results are available for this feature:
BLAST of CB610690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SP21_STIAU2.355e-1334.56Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP21_MAIZE3.076e-1343.3017.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP16_ORYSJ3.076e-1337.8216.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS178_ORYSJ6.852e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS176_ARATH2.604e-1237.3817.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ6.413e-1138.9419.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610690 ID=CB610690; Name=CB610690; organism=Citrus sinensis; type=EST; length=697bp
GGGATCTTCGATTTGATTGATCAAAACACTTCTGAAGTTGTTGAGCATTT
AATTAGCGCTCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGGT
GGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCC
TTTCGGCGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCTA
GGGATACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCCT
CAGGCTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGT
GAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGA
GCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGC
AGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGA
GCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCTA
AACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAA
GTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAAT
TTGGTACGAAAGCAAAGCCCTTGTGTGTGTGTGTGTGTTTGCAAGAGCTT
CCCTTCCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGTTTGCA
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