CB610695

Overview
NameCB610695
Unique NameCB610695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13583 contig Csv1_Contig13583:1..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCSK 369
            + C QV   + PC++Y   G      CC G+R L+  ++++ DR+T CNC+K  A  I  L+ +    +P  C    PY ++ D+DCS+
Sbjct:   27 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSR 115          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPA--CCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            +TC  VT  L PC++Y    GA  P   CC G+R+L AA++T  DRR  CNC+K  A +   L+Y     L   C  +  Y ++ +++C+
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCN 91          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPA--CCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            +TC  VT  L PC++Y    GA  P   CC G+R+L AA++T  DRR  CNC+K  A +   L+Y     L   C  +  Y ++ +++C+
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCN 91          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPA--CCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCSK 369
            ++C  VT  + PC+SY V+G    P+  CC G+R LN  + ++ DRRT C+C+K  A+    L+      +P  C     + ++  +DCSK
Sbjct:   30 VSCGDVTSSIAPCLSY-VMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSK 119          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPA--CCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCSK 369
            ++C  VT  + PC+SY V+G    P+  CC G+R LN  + ++ DRRT C+C+K  A+    L+      +P  C     + ++  +DCSK
Sbjct:   30 VSCGDVTSSIAPCLSY-VMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSK 119          
The following BLAST results are available for this feature:
BLAST of CB610695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NLTP1_HORVU5.256e-1133.71Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP_AMACA6.864e-1136.67Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP6.864e-1136.67Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP3_ORYSJ8.965e-1134.07Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI8.965e-1134.07Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_B09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610695 ID=CB610695; Name=CB610695; organism=Citrus sinensis; type=EST; length=494bp
GGGGAATGCATAAACCATAATTACAATGGCACAGTGTCTCTTGCAACAGT
GCTATTGTTATTGTTGGCTGCCACTACGGCTCCCCTGAATGTAGCAACAG
CAATAACATGTGAGCAAGTGACAATCTGGCTGACACCATGCATCAGCTAT
GGTGTATTAGGTGGGGCTGTTCAGCCAGCTTGTTGTGAAGGCATTAGAGC
TTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGGACCCAATGTAATT
GTGTGAAGGAAGGCGCTGCTAGGATCCCTGGACTCGACTATGATCGTGTT
AATATGCTTCCTGACATTTGTCGGAGTAAATGTCCTTATAAACTTACACA
TGATCTTGATTGCTCTAAGTGCGCCCTTAATTCTTATCCTAGCTAGCCTG
TTATTGCTTGTTCTCTTATTCATTGTTTTGAATTTTAGGCCCTTTCCGAG
CCGATCATTTACCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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