CB610731

Overview
NameCB610731
Unique NameCB610731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.121e-22
Identity = 68/185 (36.76%), Postives = 108/185 (58.38%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--QKCNYGA--PEPNV--------------SAREALELSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 505
            M R R E++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ GKL +F +SS+M + +++Y     N G    +P++              ++   + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAE 184          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.061e-21
Identity = 64/174 (36.78%), Postives = 99/174 (56.90%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS------MLKTLERYQ----KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 505
            MGRG++E+KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFS+ GKL ++C+  +      + + LE+YQ    K  +     ++SA          E  ++K   + +Q   R++ GE+L  L  KEL ++E  L+     +R      M+D     +  E++L +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLED 160          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.820e-20
Identity = 55/145 (37.93%), Postives = 90/145 (62.07%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTR 445
            MGRG++E+++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  KL+ + S   S+ K  + YQK         V          Q+++ K+      L+R     +G +L  L   EL +L+++++ ++ QIR+ +
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIE------GVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKK 139          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.820e-20
Identity = 57/145 (39.31%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTR 445
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  KL+E+ S ++  K + + YQ  +    + +V A +   +  Q+   KL      L+   +  LGE L  L+ +EL  LE +++ + K +R  +
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS----DVDVWATQYERM--QETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERK 139          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19
Identity = 57/159 (35.85%), Postives = 92/159 (57.86%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS--SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQH 484
            MGRGR E+KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS  GKLY F S +  S+ + +ERY+   +     ++      EL       K+ +  + L++  R +  ++        LE+LE  L+ +++++RS + + +   +  LQ+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQN 153          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = 2
Query:   92 GLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYL---KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 505
            GLLKKA EL++LCDA++ +IIFS+ GK++EF S   SM + ++RYQK         +S   A    +QQ Y    ++K   + LQ + R+  GE+L  L   E+  LE+QL++S+ ++RS + Q +   L  L+ KE +L E
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK---------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEE 134          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--------------------QKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 346
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y                    +K N G   P+  +  AL   ++++Y K+   ++ + +S +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHK 130          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.696e-16
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 280
            MGR ++++ RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFS+  KLY++ +S+ M + L +Y +  Y  P  +++ +  +E
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQY-ASTDMDRVLLKYTE--YNEPHESLTNKNIIE 86          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.696e-16
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 274
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of CB610731 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.696e-16
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 274
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
The following BLAST results are available for this feature:
BLAST of CB610731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD55_ORYSJ8.121e-2236.76MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MADS4_ORYSJ1.061e-2136.78MADS-box transcription factor 4 OS=Oryza sativa su... [more]
CMB2_DIACA5.820e-2037.93MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AP3_ARATH5.820e-2039.31Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD32_ORYSJ2.888e-1935.85MADS-box transcription factor 32 OS=Oryza sativa s... [more]
AP32_ASAEU1.872e-1838.73MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MEF2C_PIG2.288e-1636.64Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2_DROME8.696e-1647.19Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA8.696e-1650.57Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT8.696e-1650.57Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_F09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610731 ID=CB610731; Name=CB610731; organism=Citrus sinensis; type=EST; length=536bp
GGGGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGA
ACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTG
AAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCAT
CATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCA
TGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAA
CCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATA
TCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATC
TCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTT
GAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCA
GTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGA
GCGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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