CB610733

Overview
NameCB610733
Unique NameCB610733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.915e-25
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLS---AEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 454
            FKQE+ L             Y DR+P+IVE+A  SD+P+I+KKK+L P+++ +  F+  IRK +  S    +KAIF+FV+ N LPP+  ++S+IY+  KDEDGFLY+ YSGENTFGS I
Sbjct:    8 FKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGSDI 126          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  170 YPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            YPDRIPVI+EK   +D+P+++K KYLVP D+TVG F++++ KR++L   KA+F+FV N LP T + M ++Y   K+EDGFLY+ YS E TFG
Sbjct:   28 YPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSD-IPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            FKQ   L             +P++IPV+VE+  R   +P +DK K+LVP +LT+ QF+ +IR R+ L A +A ++ V+N  L    A M+ IY + KDEDGF+Y+TY+ + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 42/127 (33.07%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIQV*PCDYLSA 484
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE ++DEDGFLY+ Y+ + TFG+ + V    Y+SA
Sbjct:    7 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTALAV---TYMSA 130          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIQV 460
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +KDEDGFLY+ Y+ + TFG  + V
Sbjct:    7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 39/119 (32.77%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIQV 460
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE ++DEDGFLY+ Y+ + TFG+ + V
Sbjct:    7 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTAMAV 125          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 39/119 (32.77%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIQV 460
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +  +YE +KDEDGFLY+ Y+ + TFG  + V
Sbjct:    7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  110 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAE-RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            FKQ                 +P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE++KDEDGFLY+ Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
The following BLAST results are available for this feature:
BLAST of CB610733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8L_DICDI1.915e-2548.74Autophagy-related protein 8-like protein DDB_G0290... [more]
ATG8H_ARATH2.502e-2554.35Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
MLP3C_HUMAN1.470e-1741.23Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT4.003e-1533.07Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN4.003e-1533.61Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE8.918e-1532.77Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN1.521e-1432.77Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT3.389e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE3.389e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN3.389e-1434.21Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_F12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610733 ID=CB610733; Name=CB610733; organism=Citrus sinensis; type=EST; length=673bp
GGGGCTTTTGAAGGATTTTGATCATTAAAGGATTCTCGCTCTTTGCTGTT
TTTTTTTCCTCTCGCTTCTTCGCTTCGACTCTTCACAAGGAGGAATGGCA
AAGAGTTACTTCAAGCAAGAGCATGATCTTGAGAAGAGACGCGCCGAGGC
TGCAAGGATTAGGGAGAAGTACCCTGACAGGATTCCGGTGATTGTGGAGA
AGGCAGAGAGAAGTGACATACCAAATATAGATAAGAAGAAGTATCTTGTT
CCAGCTGACCTGACTGTAGGACAATTTGTCTATGTCATCCGTAAAAGGAT
CAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCC
CACCTACAGGTGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAA
GATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCA
CATCCAAGTTTAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTT
GTGCGACCACATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATAT
TCCTTTATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAAT
ATGTACAGTTACCTATTGTATATAAGTCTTAAAGGCATAATATGTCAAAT
TTCTTTCTTGCCTTTCTATTTTG
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