CB610765

Overview
NameCB610765
Unique NameCB610765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_CANGA (40S ribosomal protein S28 OS=Candida glabrata GN=RPS28A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  100 AVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            A V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DIL L+
Sbjct:   10 ARVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLM 57
[Close]
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_SPOFR (40S ribosomal protein S28 OS=Spodoptera frugiperda GN=RpS28 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.845e-12
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            MD     A VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDILTL+
Sbjct:    1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLL 55
[Close]
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_PAPDA (40S ribosomal protein S28 OS=Papilio dardanus GN=RpS28 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.845e-12
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            MD     A VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDILTL+
Sbjct:    1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLL 55
[Close]
BLAST of CB610765 vs. ExPASy Swiss-Prot
Match: RS28_BOMMO (40S ribosomal protein S28 OS=Bombyx mori GN=RpS28 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.845e-12
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   79 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLV 243
            MD     A VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDILTL+
Sbjct:    1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLL 55
The following BLAST results are available for this feature:
BLAST of CB610765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS28_CANGA2.353e-1272.9240S ribosomal protein S28 OS=Candida glabrata GN=R... [more]
RS28_SPOFR6.845e-1263.6440S ribosomal protein S28 OS=Spodoptera frugiperda... [more]
RS28_PAPDA6.845e-1263.6440S ribosomal protein S28 OS=Papilio dardanus GN=R... [more]
RS28_BOMMO6.845e-1263.6440S ribosomal protein S28 OS=Bombyx mori GN=RpS28 ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_B05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610765 ID=CB610765; Name=CB610765; organism=Citrus sinensis; type=EST; length=513bp
GGGGCATTGCAAGAACTGCTGAAAGAAATTAGCAGCCGCTTCTGTCACCT
TCTCTCTCTTCTCGCCTCTTCGCTCAGAATGGATTCTCAGATTAAGCACG
CTGTGGTGGTGAAAGTCATGGGCCGCACTGGTTCAAGAGGACAGGTTACT
CAAGTGAGAGTCAAGTTTTTAGATGATCAGAACCGATTCATCATGAGGAA
TGTGAAGGGACCCGTTAGAGAAGGTGATATCCTCACTTTGGTCGAGTCTG
AGAGAGAAGCTAGGAGGCTCCGTTGAAGAGTCCATCTCTGGTCATACTAT
CTCAAACTTTTTGTTGGAAACTAGGGTTCATTACTGTTGTTTTTAGTAGG
CTAGTGATTGGCAATGTTATGAGTTTCACAACTTATTTTGAAGGTTTTCA
TATTAAGACTGGGTTTTGAGCCATGAATTATATGTTTTGGGATGTTTAAT
ATCGTTCTCTTTGAAATGGAGTTAAATTTGCTGTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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