CB610770
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Ashbya gossypii GN=RPB5 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30 Identity = 74/186 (39.78%), Postives = 108/186 (58.06%), Query Frame = 2 Query: 185 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715 ++ + RL+R RTV +M+RDRGYF+ E+++S E F AK+ ++M R + N + + ++V F DE VG+KTMK + + +N I + Q +TP A + + A +E F E L+VNI H LVP+H L++EEKK LLKRY +KE+QLPRIQ DP+A Y G Sbjct: 5 NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSV-APATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLG 189
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_KLULA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces lactis GN=RPB5 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29 Identity = 77/185 (41.62%), Postives = 106/185 (57.30%), Query Frame = 2 Query: 188 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715 + I RL+R +TV +M+RDRGYF+ EI++S E F AK+ ++M + + N + + I +V F DE VGVKTMK + + +N I + Q +TP A I +A +E F EA L+VNI H LVP+H L+ EKK LLKRY +KE+QLPRIQ DP+A Y G Sbjct: 6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANK-ILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPVALYLG 189
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_KLUMA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29 Identity = 77/182 (42.31%), Postives = 105/182 (57.69%), Query Frame = 2 Query: 197 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715 I RL+R RTV +M+RDRGYF+ EI++S E F K+ ++M + + N + + I +V F DE VGVKTMK + + +N I + Q +TP A I +A +E F EA L+VNI H LVP+H L++ EKK LLKRY +KE+QLPRIQ DP+A Y G Sbjct: 9 ISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANK-ILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYLG 189
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_DEBHA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Debaryomyces hansenii GN=RPB5 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29 Identity = 71/186 (38.17%), Postives = 108/186 (58.06%), Query Frame = 2 Query: 185 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715 +D I RL+R +TV +M+RDRGY++ EI+MS +F ++ ++M + N +++ + +V F DE VG+KTM+ + + +N I + Q ++TP A I +S +E FQE +L+VNI H LVP+H L +EKK LL+RY +KE+QLPRIQ DP+ RY G Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLIPTVSPA-SIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDPVGRYLG 188
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_YARLI (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Yarrowia lipolytica GN=RPB5 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28 Identity = 70/187 (37.43%), Postives = 111/187 (59.36%), Query Frame = 2 Query: 182 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715 +S ++ ++L+++ RT ++++DRGY + D E+N+S +QF+++ + M + + + S + I+V F +E V VKTM+ + + ILV + N+TP A I + A ++ FQE +LLVNI +HVLVP H L+ EKK LL+RY +KE+QLPRIQ DP+ARY G Sbjct: 1 MSSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLIPSV-APATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLG 186 The following BLAST results are available for this feature:
BLAST of CB610770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CB610770 ID=CB610770; Name=CB610770; organism=Citrus sinensis; type=EST; length=717bpback to top |