CB610770

Overview
NameCB610770
Unique NameCB610770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Ashbya gossypii GN=RPB5 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30
Identity = 74/186 (39.78%), Postives = 108/186 (58.06%), Query Frame = 2
Query:  185 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715
            ++  + RL+R  RTV +M+RDRGYF+   E+++S E F AK+ ++M R    +     N + +          ++V F DE  VG+KTMK +   +  +N    I + Q  +TP A   +  + A   +E F E  L+VNI  H LVP+H  L++EEKK LLKRY +KE+QLPRIQ  DP+A Y G
Sbjct:    5 NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSV-APATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLG 189          
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_KLULA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces lactis GN=RPB5 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 77/185 (41.62%), Postives = 106/185 (57.30%), Query Frame = 2
Query:  188 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715
            +  I RL+R  +TV +M+RDRGYF+   EI++S E F AK+ ++M +    +     N + + I         +V F DE  VGVKTMK +   +  +N    I + Q  +TP A   I   +A   +E F EA L+VNI  H LVP+H  L+  EKK LLKRY +KE+QLPRIQ  DP+A Y G
Sbjct:    6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANK-ILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPVALYLG 189          
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_KLUMA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 77/182 (42.31%), Postives = 105/182 (57.69%), Query Frame = 2
Query:  197 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715
            I RL+R  RTV +M+RDRGYF+   EI++S E F  K+ ++M +    +     N + + I         +V F DE  VGVKTMK +   +  +N    I + Q  +TP A   I   +A   +E F EA L+VNI  H LVP+H  L++ EKK LLKRY +KE+QLPRIQ  DP+A Y G
Sbjct:    9 ISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANK-ILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYLG 189          
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_DEBHA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Debaryomyces hansenii GN=RPB5 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 71/186 (38.17%), Postives = 108/186 (58.06%), Query Frame = 2
Query:  185 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715
            +D  I RL+R  +TV +M+RDRGY++   EI+MS  +F ++  ++M      +     N +++ +         +V F DE  VG+KTM+ +   +  +N    I + Q ++TP A   I  +S    +E FQE +L+VNI  H LVP+H  L  +EKK LL+RY +KE+QLPRIQ  DP+ RY G
Sbjct:    4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLIPTVSPA-SIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDPVGRYLG 188          
BLAST of CB610770 vs. ExPASy Swiss-Prot
Match: RPAB1_YARLI (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Yarrowia lipolytica GN=RPB5 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28
Identity = 70/187 (37.43%), Postives = 111/187 (59.36%), Query Frame = 2
Query:  182 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 715
            +S ++ ++L+++ RT  ++++DRGY + D E+N+S +QF+++  + M +        + + S +          I+V F +E  V VKTM+ +   +        ILV + N+TP A   I  + A   ++ FQE +LLVNI +HVLVP H  L+  EKK LL+RY +KE+QLPRIQ  DP+ARY G
Sbjct:    1 MSSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLIPSV-APATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLG 186          
The following BLAST results are available for this feature:
BLAST of CB610770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RPAB1_ASHGO1.684e-3039.78DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_KLULA1.092e-2941.62DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_KLUMA1.862e-2942.31DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_DEBHA7.077e-2938.17DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_YARLI3.512e-2837.43DNA-directed RNA polymerases I, II, and III subuni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_C05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610770 ID=CB610770; Name=CB610770; organism=Citrus sinensis; type=EST; length=717bp
GGGGGAATCCAATCACACCACTCCACGGTCTCGTGTAGCCGTTTGTTGCC
GCTGCCAACGACCCGCTGCCAACGACCCGCTGCTGTCGCCGCCGCTGACC
GTTTTCTTGAAACGTACAAGTGGGTATTAGTTTTACTCAACAGCTTCGTG
TCATCTGAAATTTAAAGGATAAAACATGACTTTATCCGATGAAGAAATCA
AAAGGCTATTCAGAATCCGGAGGACGGTCATGCAGATGCTCAGAGATAGG
GGTTATTTTGTTGGAGACTTTGAAATCAATATGAGCAAAGAACAGTTCAT
TGCTAAATTTGGTGAGAACATGAAAAGGGAGGACCTTGTTATCAATAAAG
CATTACGAAATGATAGCTCAGATCAGATCTATGTTTTCTTCCCTGATGAA
CAAAAAGTTGGGGTTAAGACAATGAAGACTTATACTAATCGTATGAAATC
GGAAAATGTTTTCCGAGCAATATTGGTGGTTCAACAAAATTTGACTCCCT
TTGCTCGAACATGCATACAAGAGATATCTGCAAAATTCCACTTGGAGGTA
TTCCAGGAGGCAGAGCTTTTGGTCAACATCAAAGAACACGTTCTGGTTCC
TGAGCATCAAGTGCTTACAAATGAAGAGAAGAAGACTTTGCTGAAGCGGT
ATACAGTGAAGGAAACGCAGTTGCCACGTATTCAAGTGACTGATCCAATT
GCAAGATATTATGGGCT
back to top