CB610803

Overview
NameCB610803
Unique NameCB610803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.235e-88
Identity = 155/239 (64.85%), Postives = 196/239 (82.01%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  V++L RRTKNNP LIGEPGVGKTA+ EGLAQRI+ G+VP  L   RL+ALDMGAL+AGAKYRGEFEERLK++L E+ + EG++ILFIDE+H ++GAG+ EG+MDA N+ KP LARG+L C+GATTL EYR+++EKDAA ERRFQ+V V EPS  DT++ILRGLKE+YE HH V I D A++ AA+LS RYIT R LPDKAIDL+DEA + +R+ +DS PE +D L+R+ + LK
Sbjct:  185 DEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLKGKRLLALDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEKDAALERRFQKVLVEEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEVLDRLDRRLIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.837e-88
Identity = 155/239 (64.85%), Postives = 196/239 (82.01%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++L RRTKNNP +IGEPGVGKTA+VEGLAQRI+  +VP  L   R+++LDMGALVAGAKYRGEFEERLK+VL E+ + EG +ILFIDE+H ++GAG+ EGSMDA N+ KP LARG+L C+GATTL+EYR+Y+EKD A ERRFQ+V V EP+V DT++ILRGLKE+YE HH V I D A+V AA LS RY++ R LPDKAIDL+DEA +++R+ +DS PE +D LERK + LK
Sbjct:  185 DEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKIIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.837e-88
Identity = 155/239 (64.85%), Postives = 196/239 (82.01%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++L RRTKNNP +IGEPGVGKTA+VEGLAQRI+  +VP  L   R+++LDMGALVAGAKYRGEFEERLK+VL E+ + EG +ILFIDE+H ++GAG+ EGSMDA N+ KP LARG+L C+GATTL+EYR+Y+EKD A ERRFQ+V V EP+V DT++ILRGLKE+YE HH V I D A+V AA LS RY++ R LPDKAIDL+DEA +++R+ +DS PE +D LERK + LK
Sbjct:  185 DEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKIIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.837e-88
Identity = 156/239 (65.27%), Postives = 196/239 (82.01%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++L RRTKNNP +IGEPGVGKTA+VEGLAQRI+  +VP  L   R+++LDMGALVAGAKYRGEFEERLK+VL E+ + EG +ILFIDE+H ++GAG+ EGSMDA N+ KP LARG+L C+GATTL+EYR+Y+EKD A ERRFQ+V V EP+V DT++ILRGLKE+YE HH V I D A+V AA LS RYI+ R LPDKAIDL+DEA +++R+ +DS PE +D LERK + LK
Sbjct:  185 DEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKIIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_PORGI (Chaperone protein clpB OS=Porphyromonas gingivalis GN=clpB PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.837e-88
Identity = 160/234 (68.38%), Postives = 194/234 (82.91%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EIR  ++ILSRRTKNNP LIGEPGVGKTA+ EGLA RIVRGDVP NL + ++ +LDMGAL+AGAKY+GEFEERLKAV+ EV  AEG++ILFIDEIH ++GAG++EG+MDAAN+ KP LARG+LR IGATTL+EYRKY EKD A ERRFQ V V EP    ++SILRGLKEKYE HH VRI+D A++ A +LS RYIT R LPDKAIDL+DEA A +R+ +DS PEE+D + R+
Sbjct:  183 DEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGLAYRIVRGDVPENLRNKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTGAEGEIILFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKYFEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLPDKAIDLMDEAAARLRMEVDSLPEELDEISRR 416          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.930e-88
Identity = 163/239 (68.20%), Postives = 197/239 (82.43%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            EEIR  ++IL RRTKNNP LIGEPGVGKTAVVEGLAQRIV+GDVP  L   R+++L MG+L+AGAKYRGEFEERLKAV++E  ++ G++ILFIDEIH V+GAG+ EG++DA N+ KP LARG+L  IGATTL+EYR+ +EKD A ERRFQ V+V EPS+ +TVSILRG+KEKYE HHGVRI D AL+ AAQLS RYI  R LPDKAIDLVDEA A +R+ L+S PE ID L R+K+ L+
Sbjct:  177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQETVQSAGQIILFIDEIHTVVGAGKAEGAVDAGNMLKPALARGELHLIGATTLDEYRE-IEKDPALERRFQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAAAQLSHRYIADRKLPDKAIDLVDEAAARLRMALESSPESIDALNRRKLQLE 414          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.930e-88
Identity = 163/240 (67.92%), Postives = 199/240 (82.92%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  V++LSRRTKNNP LIGEPGVGKTAVVEGLAQRIV+GDVP +L + RL+ALD+GA+VAGAKYRGEFEERLK VL E+++++G++I FIDE+H V+GAG   + +MDA N+ KPMLARG+LR +GATTL+EYR+ +EKD A ERRFQQV VAEPSV DT++ILRGLK +YE HH V+I D ALV AA LS RYIT R LPDKAIDLVDEA + +R+ +DS P EID L+R+   LK
Sbjct:  186 QEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVALDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDEYRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAAALSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRQVDRLK 425          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.523e-87
Identity = 162/240 (67.50%), Postives = 198/240 (82.50%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  V++LSRRTKNNP LIGEPGVGKTAVVEGLAQRIV+GDVP +L D RL+ALD+GA+VAGAKYRGEFEERLK VL E+++++G+V+ FIDE+H V+GAG   + +MDA N+ KPMLARG+LR +GATTL+EYR+ +EKD A ERRFQQV VAEP+V D+++ILRGLK +YE HH V+I D ALV AA LS RYIT R LPDKAIDLVDEA + +R+ +DS P EID L+R    LK
Sbjct:  186 QEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVALDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQVVTFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDEYRERIEKDPALERRFQQVLVAEPTVEDSIAILRGLKGRYEAHHKVQIADSALVAAASLSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRSVDRLK 425          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.523e-87
Identity = 159/234 (67.95%), Postives = 195/234 (83.33%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            EEIR  ++ILSRRTKNNP LIGEPG GKTA+VEGLA RI+RGDVP NL + ++ +LDMGALVAGAKY+GEFEERLK+V+ EV+++EG +ILFIDEIH ++GAG+ EG+MDAAN+ KP LARG+LR IGATTL+EY+KY EKD A ERRFQ V V EP    T+SILRGLKE+YE HH VRI+D A++ A +LS+RYIT R LPDKAIDL+DEA A +R+ +DS PEE+D + RK
Sbjct:  183 EEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAHRILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKSVVNEVKKSEGDIILFIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKALERRFQIVQVDEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSSRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRK 416          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.523e-87
Identity = 157/240 (65.42%), Postives = 200/240 (83.33%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE-GSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++LSRR+KNNP LIGEPGVGKTA+ E LAQRIV GDVP +L + +LI+LD+G+L+AGAKYRGEFE+RLKAVL+EV E+ G ++LFIDE+H V+G G  + G+MDA NL KPMLARG+LRCIGATTL+E+RK++EKDAA ERRFQQVYV +PSV +T+SILRGLKE+YE HH V+I D ALV AA LSARYI  R LPDKAIDLVDEA A +++ + S P +++ ++R+ M L+
Sbjct:  187 DEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIVNGDVPESLKNRQLISLDIGSLIAGAKYRGEFEDRLKAVLREVTESNGNIVLFIDELHTVVGTGSNQQGAMDAGNLLKPMLARGELRCIGATTLDEFRKFIEKDAALERRFQQVYVDQPSVENTISILRGLKERYEVHHNVKISDSALVAAATLSARYIADRFLPDKAIDLVDEAAAQLKMEITSKPADLEAIDRRLMQLE 426          
The following BLAST results are available for this feature:
BLAST of CB610803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_PSEPK5.235e-8864.85Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_VIBVY6.837e-8864.85Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_VIBVU6.837e-8864.85Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_VIBCH6.837e-8865.27Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_PORGI6.837e-8868.38Chaperone protein clpB OS=Porphyromonas gingivalis... [more]
CLPB_MEIRU8.930e-8868.20Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB1_STRAW8.930e-8867.92Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPB_STRCO1.523e-8767.50Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_BACTN1.523e-8767.95Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB1_ANASP1.523e-8765.42Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610803 ID=CB610803; Name=CB610803; organism=Citrus sinensis; type=EST; length=721bp
GGGGAAGAAATTAGAACGTTTGTTCGAATTCTGTCAAGGAGGACTAAAAA
CAATCCTGCTCTTATTGGAGAGCCAGGAGTTGGTAAAACCGCTGTGGTGG
AAGGATTGGCTCAGAGAATTGTGCGAGGAGATGTGCCTAGCAACCTTGCT
GATGTGAGGCTCATTGCTTTGGATATGGGTGCTCTGGTTGCAGGCGCCAA
GTATAGGGGAGAGTTTGAAGAGAGGTTGAAGGCTGTTCTGAAAGAAGTAG
AAGAAGCTGAGGGAAAAGTGATTTTGTTTATTGATGAGATTCACCTTGTC
CTTGGAGCTGGTCGAACCGAGGGATCAATGGATGCTGCTAACCTCTTTAA
GCCTATGCTTGCAAGAGGCCAGCTTAGATGTATTGGTGCTACCACGCTCG
AGGAGTATAGAAAGTATGTGGAGAAAGACGCTGCATTTGAGAGAAGGTTC
CAACAAGTATATGTGGCTGAACCTAGCGTTCCTGATACAGTTAGCATTCT
TCGTGGATTGAAGGAGAAGTATGAGGGTCATCATGGTGTTCGGATTCAGG
ATCGTGCTCTTGTTGTTGCGGCACAACTATCAGCACGATATATAACAGGA
CGTCATCTCCCAGACAAGGCAATTGATTTGGTTGATGAAGCTTGCGCAAA
TGTGAGGGTNNAGCTTGATAGTCACCCAGAGGAAATTGATAATCTAGAGA
GGAAGAAAATGCCATTAAAGN
back to top