CB610803

Overview
NameCB610803
Unique NameCB610803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.879e-78
Identity = 140/234 (59.83%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV+ +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+ +A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ + V EP+V DT+ IL+GL+++YE HH + I D AL  AA+LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.879e-78
Identity = 140/234 (59.83%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV+ +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+ +A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ + V EP+V DT+ IL+GL+++YE HH + I D AL  AA+LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_HELHP (Chaperone protein clpB OS=Helicobacter hepaticus GN=clpB PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.879e-78
Identity = 147/233 (63.09%), Postives = 185/233 (79.40%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLER 702
            +EI   ++IL R++KNNP L+GEPGVGKTAVVEGLAQRIV   VP++L + +LIALDM AL+AGAKYRGEFEERLK V+ EV++A G +ILFIDEIH ++GAG +EGSMDAAN+ KP LARG+L  IGATTL+EYRKY EKDAA  RRFQ + V EPS+ + + ILRG+K   E HH V I D ALV AA+LS+RYIT R LPDKAIDL+DEA A +++ ++S P E+  +++
Sbjct:  185 DEINAMMQILIRKSKNNPILLGEPGVGKTAVVEGLAQRIVAKAVPTSLQNKKLIALDMSALIAGAKYRGEFEERLKNVVDEVKKA-GNIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALTRRFQPINVNEPSINEALQILRGIKPNLEAHHNVNITDAALVAAAKLSSRYITDRFLPDKAIDLIDEAAAELKMQIESEPLELSKIKK 416          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
The following BLAST results are available for this feature:
BLAST of CB610803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPC_STAES2.879e-7859.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ2.879e-7859.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_HELHP2.879e-7863.09Chaperone protein clpB OS=Helicobacter hepaticus G... [more]
CLPC_STAAW3.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS3.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR3.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAN3.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAM3.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAC3.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAB3.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610803 ID=CB610803; Name=CB610803; organism=Citrus sinensis; type=EST; length=721bp
GGGGAAGAAATTAGAACGTTTGTTCGAATTCTGTCAAGGAGGACTAAAAA
CAATCCTGCTCTTATTGGAGAGCCAGGAGTTGGTAAAACCGCTGTGGTGG
AAGGATTGGCTCAGAGAATTGTGCGAGGAGATGTGCCTAGCAACCTTGCT
GATGTGAGGCTCATTGCTTTGGATATGGGTGCTCTGGTTGCAGGCGCCAA
GTATAGGGGAGAGTTTGAAGAGAGGTTGAAGGCTGTTCTGAAAGAAGTAG
AAGAAGCTGAGGGAAAAGTGATTTTGTTTATTGATGAGATTCACCTTGTC
CTTGGAGCTGGTCGAACCGAGGGATCAATGGATGCTGCTAACCTCTTTAA
GCCTATGCTTGCAAGAGGCCAGCTTAGATGTATTGGTGCTACCACGCTCG
AGGAGTATAGAAAGTATGTGGAGAAAGACGCTGCATTTGAGAGAAGGTTC
CAACAAGTATATGTGGCTGAACCTAGCGTTCCTGATACAGTTAGCATTCT
TCGTGGATTGAAGGAGAAGTATGAGGGTCATCATGGTGTTCGGATTCAGG
ATCGTGCTCTTGTTGTTGCGGCACAACTATCAGCACGATATATAACAGGA
CGTCATCTCCCAGACAAGGCAATTGATTTGGTTGATGAAGCTTGCGCAAA
TGTGAGGGTNNAGCTTGATAGTCACCCAGAGGAAATTGATAATCTAGAGA
GGAAGAAAATGCCATTAAAGN
back to top