CB610803

Overview
NameCB610803
Unique NameCB610803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.760e-78
Identity = 141/234 (60.26%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L D R+++LDMG +VAG KYRGEFEERLK V++E+++A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EPSV DTV+IL+GL+++YE HH + I D A+  A +LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIQQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQE 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: HS104_YEAST (Heat shock protein 104 OS=Saccharomyces cerevisiae GN=HSP104 PE=1 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 6.414e-78
Identity = 145/234 (61.97%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            EEIR+ +R+L+RR K+NP LIGEPG+GKTA++EG+AQRI+  DVP+ L   +L +LD+ AL AGAKY+G+FEER K VLKE+EE++  ++LFIDEIH+++G G+     DAAN+ KP L+RGQL+ IGATT  EYR  VEKD AFERRFQ++ VAEPSV  TV+ILRGL+ KYE HHGVRI D ALV AAQL+ RY+  R LPD A+DLVD +CA V V  DS PEE+D+ ER+
Sbjct:  191 EEIRSTIRVLARRIKSNPCLIGEPGIGKTAIIEGVAQRIIDDDVPTILQGAKLFSLDLAALTAGAKYKGDFEERFKGVLKEIEESKTLIVLFIDEIHMLMGNGKD----DAANILKPALSRGQLKVIGATTNNEYRSIVEKDGAFERRFQKIEVAEPSVRQTVAILRGLQPKYEIHHGVRILDSALVTAAQLAKRYLPYRRLPDSALDLVDISCAGVAVARDSKPEELDSKERQ 420          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.414e-78
Identity = 141/234 (60.26%), Postives = 183/234 (78.21%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   +++LSRRTKNNP LIGEPGVGKTAV EGLAQ+I+  +VP  L D R++ LDMG +VAG KYRGEFE+RLK V++E+ +A G +ILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRKY+EKDAA ERRFQ + V EP++ +T+ IL GL+++YE HH V I D A+  AA LS RYIT R LPDKAIDL+DEA + VR+   + P  +  LE+K
Sbjct:  190 KEIERVIQVLSRRTKNNPVLIGEPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQA-GNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYITDRFLPDKAIDLIDEAGSKVRLRSYTVPPNLKELEQK 422          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.094e-77
Identity = 141/234 (60.26%), Postives = 183/234 (78.21%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   + +LSRRTKNNP LIGEPGVGKTA+ EGLAQ IV  +VP  L   R+++LDMG +VAG KYRGEFEERLK V++E+ +A G VILFIDE+H ++GAG  EG++DA+N+ KP LARG+L+CIGATTL+EYRK +EKDAA ERRFQ V V EP+V DT+ IL+GL+++YE HH + I D ALV AA+LS RY++ R LPDKAIDL+DEA + VR+   + P  +  +E++
Sbjct:  187 KEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQA-GNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQ 419          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.092e-77
Identity = 141/233 (60.52%), Postives = 182/233 (78.11%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +I    +IL RRTKNNP LIGEPGVGKTA+ EGLAQRI  GDVP  +   ++I LDMG LVAG KYRGEFEERLK +++E+++++ ++ILFIDE+H ++GAG  EG++DAAN+ KP LARG+L+CIGATTL+EYRK++EKD A ERRFQ V V EP+V +T+ IL+GL+E+YE HH +R  D  LV AAQLS +YI+ R LPDKAIDL+DEA + VR+     PEE   LE++
Sbjct:  280 QIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKE 511          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_MYCGA (Chaperone protein clpB OS=Mycoplasma gallisepticum GN=clpB PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.262e-77
Identity = 135/236 (57.20%), Postives = 186/236 (78.81%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGR--TEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            EEIR  + ILSR+ KNNP LIGEPGVGKTA+VEG A++IV GDVP NL DV ++ L + +L+AG +++G FEERL  +LKEV+ + GKVILFIDEIH ++G G+  +  +MDAAN+ KPM+ARG+++ IGATT++EYRKY+EKD A ERR Q++ V EP+  + ++I+RGL+E++E  H VRI D ALV A ++SARYI+ R+LPDKAIDL+DEA A ++  + S P E+DN+++K
Sbjct:   38 EEIRRLIEILSRKNKNNPVLIGEPGVGKTAIVEGFARKIVNGDVPDNLKDVEVVELSLSSLIAGTQFQGSFEERLNKILKEVKNSSGKVILFIDEIHQLVGMGKNSSNSAMDAANILKPMMARGEIKVIGATTIDEYRKYIEKDGALERRMQKILVDEPTKQEALTIMRGLRERWEAFHKVRIFDDALVAAVEMSARYISDRYLPDKAIDLIDEAAAKIKTLIHSLPPELDNIKQK 273          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.210e-76
Identity = 142/234 (60.68%), Postives = 181/234 (77.35%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   +++LSRRTKNNP LIGEPGVGKTAVVEGLAQ IV G+VP  L D +L  LD+G+LVAG++YRG+FEERLK VLKE+    G +ILFIDE+H ++GAG  EG++DAA++ KP LARG+L+ IGATTL+EYRKY+EKDAA ERRFQ V V EP+V  T+ IL+GL+++YE HH V I D A+V AA L+ RYI  R LPDKAIDL+DEA A +R+   + P ++   + K
Sbjct:  195 KEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIN-TRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEK 427          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.210e-76
Identity = 142/234 (60.68%), Postives = 181/234 (77.35%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   +++LSRRTKNNP LIGEPGVGKTAVVEGLAQ IV G+VP  L D +L  LD+G+LVAG++YRG+FEERLK VLKE+    G +ILFIDE+H ++GAG  EG++DAA++ KP LARG+L+ IGATTL+EYRKY+EKDAA ERRFQ V V EP+V  T+ IL+GL+++YE HH V I D A+V AA L+ RYI  R LPDKAIDL+DEA A +R+   + P ++   + K
Sbjct:  195 KEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIN-TRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEK 427          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.210e-76
Identity = 142/234 (60.68%), Postives = 181/234 (77.35%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   +++LSRRTKNNP LIGEPGVGKTAVVEGLAQ IV G+VP  L D +L  LD+G+LVAG++YRG+FEERLK VLKE+    G +ILFIDE+H ++GAG  EG++DAA++ KP LARG+L+ IGATTL+EYRKY+EKDAA ERRFQ V V EP+V  T+ IL+GL+++YE HH V I D A+V AA L+ RYI  R LPDKAIDL+DEA A +R+   + P ++   + K
Sbjct:  195 KEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIN-TRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEK 427          
The following BLAST results are available for this feature:
BLAST of CB610803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPC_STAA83.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA33.760e-7860.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
HS104_YEAST6.414e-7861.97Heat shock protein 104 OS=Saccharomyces cerevisiae... [more]
CLPB_OCEIH6.414e-7860.26Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_STAS11.094e-7760.26ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC7.092e-7760.52ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_MYCGA9.262e-7757.20Chaperone protein clpB OS=Mycoplasma gallisepticum... [more]
CLPC_MYCTU1.210e-7660.68Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCLE1.210e-7660.68Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO1.210e-7660.68Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610803 ID=CB610803; Name=CB610803; organism=Citrus sinensis; type=EST; length=721bp
GGGGAAGAAATTAGAACGTTTGTTCGAATTCTGTCAAGGAGGACTAAAAA
CAATCCTGCTCTTATTGGAGAGCCAGGAGTTGGTAAAACCGCTGTGGTGG
AAGGATTGGCTCAGAGAATTGTGCGAGGAGATGTGCCTAGCAACCTTGCT
GATGTGAGGCTCATTGCTTTGGATATGGGTGCTCTGGTTGCAGGCGCCAA
GTATAGGGGAGAGTTTGAAGAGAGGTTGAAGGCTGTTCTGAAAGAAGTAG
AAGAAGCTGAGGGAAAAGTGATTTTGTTTATTGATGAGATTCACCTTGTC
CTTGGAGCTGGTCGAACCGAGGGATCAATGGATGCTGCTAACCTCTTTAA
GCCTATGCTTGCAAGAGGCCAGCTTAGATGTATTGGTGCTACCACGCTCG
AGGAGTATAGAAAGTATGTGGAGAAAGACGCTGCATTTGAGAGAAGGTTC
CAACAAGTATATGTGGCTGAACCTAGCGTTCCTGATACAGTTAGCATTCT
TCGTGGATTGAAGGAGAAGTATGAGGGTCATCATGGTGTTCGGATTCAGG
ATCGTGCTCTTGTTGTTGCGGCACAACTATCAGCACGATATATAACAGGA
CGTCATCTCCCAGACAAGGCAATTGATTTGGTTGATGAAGCTTGCGCAAA
TGTGAGGGTNNAGCTTGATAGTCACCCAGAGGAAATTGATAATCTAGAGA
GGAAGAAAATGCCATTAAAGN
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