CB610803

Overview
NameCB610803
Unique NameCB610803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_MYCGE (Chaperone protein clpB OS=Mycoplasma genitalium GN=clpB PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.339e-74
Identity = 131/240 (54.58%), Postives = 183/240 (76.25%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGR--TEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            EIR  + ILSR++KNNP LIGEPGVGKTA+VEG  +R+V  DVP NL DV +  L +  L+AG K++GEFE+R+  +LK+V+E+ G++ILFIDEIH ++G GR  + G+MD AN+ KPMLARG+++ IGATTL+EYR+Y+EKD A ERRFQ++ + EPS  + ++I+RGLK ++E  H + I D ALV A ++S RYI  R+LPDKAIDL+DEA A ++  + S P  ID+L+R+ + L+
Sbjct:   40 EIRRLIEILSRKSKNNPVLIGEPGVGKTAIVEGFVRRVVSNDVPLNLRDVEIYELSLSGLIAGTKFQGEFEKRINTILKQVKESNGRIILFIDEIHQIVGLGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREYIEKDGALERRFQKILINEPSSQEALTIMRGLKTRWELFHNITIFDSALVAAVEMSTRYINERNLPDKAIDLIDEAAAKIKTEMSSEPVAIDSLKREIINLE 279          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNPX (Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.339e-74
Identity = 138/231 (59.74%), Postives = 180/231 (77.92%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLE 699
            EIR  +++LSRR+KNNP LIGEPGVGKTA+ E LAQRIV G+VP +L  +RLIALD+GAL+AGAK+RG+FEERL++VL+EV  ++  V+LFIDE+H V+G+ R+  S DA +L KP LARG LRCIGATT EEYR+ VEKD A  RRFQQV + EP +  ++ ILRGL+E+YE HHGV I D A+  A +L+ RYI+ R LPDKAIDL+DEA A +++ + S P+ ++  E
Sbjct:  224 EIRNLIKVLSRRSKNNPVLIGEPGVGKTAIAELLAQRIVAGEVPDSLQGLRLIALDLGALIAGAKFRGQFEERLRSVLEEVSRSDSGVVLFIDELHTVVGSDRS--STDAGSLLKPALARGDLRCIGATTPEEYRRTVEKDPALNRRFQQVLIREPDLELSLEILRGLRERYELHHGVTITDEAIQTANRLADRYISDRCLPDKAIDLIDEAAAQLKIEVTSKPQVVEEAE 452          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.635e-73
Identity = 137/233 (58.80%), Postives = 180/233 (77.25%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +I   V+IL RRTKNNP LIGEPGVGKTA+ EGLAQRI  G V       ++I LDMG L AG KYRGEFEER+K +++E+++++ ++ILFIDE+H ++GAG  EG++DAAN+ KP LARG+L+CIGATTL+EYRK++EKD A ERRFQ V V EP+V +T+ IL+GL+E+YE HH +R  D +LV AAQLS +YI+ R LPD+AIDL+DEA + VR+     PEE   LE++
Sbjct:  229 QIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLDMGLLAAGTKYRGEFEERVKKLMEEIKQSD-EIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEARELEKE 460          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.135e-73
Identity = 139/234 (59.40%), Postives = 176/234 (75.21%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   ++IL RRTKNNP LIGEPGVGKTA+ EGLAQRI   DVPS L D  +I LD+G LVAG KYRGEFEERLK ++ E++ A+  VIL IDE+H ++GAG  EG++DAANL KP LARG+L+CIGATTLEEYRK++EKD A ERRFQ V V EPSV +T+ IL GL+++YE HH + + D AL  AA+ + +YI+ R LPDKAIDL+DEA + VR+     P     L+++
Sbjct:  189 KEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKSADN-VILVIDEVHTLIGAGAAEGAIDAANLLKPALARGELQCIGATTLEEYRKHIEKDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKE 421          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 2.789e-73
Identity = 135/231 (58.44%), Postives = 175/231 (75.76%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLE 699
            E+   + IL RR KNNP LIGE GVGKTA+VEGLAQ+I+  +VP  L   RLI LD+  ++AG KYRG+FEER+KAV+ EV +  G ++LFIDE+H ++GAG  EG++DA+N+ KP LARG+++CIGATT++EYRK++EKDAA ERRFQ++ V  PSV +T+ ILRGLK+KYE HH V I + AL  AA LS +Y+ GR LPDKAIDL+DEA A VRV     P ++  LE
Sbjct:  212 EVERLILILCRRRKNNPVLIGEAGVGKTAIVEGLAQKIILNEVPDALRKKRLITLDLALMIAGTKYRGQFEERIKAVMDEVRK-HGNILLFIDELHTIVGAGAAEGAIDASNILKPALARGEIQCIGATTIDEYRKHIEKDAALERRFQKIVVHPPSVDETIEILRGLKKKYEEHHNVFITEEALKAAATLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPTDLMKLE 441          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.789e-73
Identity = 137/233 (58.80%), Postives = 177/233 (75.97%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            EI   + IL RRTKNNP L+G+PGVGKTA+VEGLAQRIV  +VP  L D  + ++DM +L+AG+KYRGEFEERLKA+L EV+E +G VILFIDEIH V+GAG  EG++DAAN+ KP LARG++R IGATT++EYRKY+EKD A ERRFQ V+V EP+   T+ IL+GL+ + E  H V+I D A+  A +L+ RY+T R LPDKAID +D+A A  ++ +   P EI  +ERK
Sbjct:  320 EINQVIEILLRRTKNNPVLVGDPGVGKTAIVEGLAQRIVNKEVPPELQDKEIWSIDMASLLAGSKYRGEFEERLKALLDEVKE-KGNVILFIDEIHTVVGAGAAEGAVDAANIMKPALARGEIRVIGATTVDEYRKYIEKDPALERRFQPVFVDEPTEEQTIEILKGLRPRLEQFHKVKISDEAIEAAVKLTKRYVTFRRLPDKAIDALDQAAARKKLKVIGTPPEIQEIERK 551          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.757e-73
Identity = 132/233 (56.65%), Postives = 177/233 (75.97%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            E+   V+ILSRR KNNP L+GEPGVGKTA+VEGLA++IV  DVP  L   R++ LD+ ++VAG KYRGEFEER+K ++ E+++A   +I+FIDE+H ++GAG  EG++DAAN+ KP L+RG+++CIGATT+ EY+KY+EKD A  RRFQ + V EPS+ DT+ IL G+K KYE HH V+  D A+  AA LS RYI  RHLPDKAIDL+DEA +  R+   + P+E  +LE+K
Sbjct:  197 EVMRVVQILSRRKKNNPILLGEPGVGKTAIVEGLAEKIVAADVPDILLKKRVLTLDLSSVVAGTKYRGEFEERIKNIVLEIKKASN-IIIFIDELHTLIGAGGAEGALDAANMLKPALSRGEIQCIGATTINEYKKYIEKDGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKRYIFERHLPDKAIDLIDEAGSRARLLNMTRPQEFKDLEKK 428          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.114e-73
Identity = 138/234 (58.97%), Postives = 175/234 (74.79%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   ++IL RRTKNNP LIGEPGVGKTA+ EGLAQRI   DVPS L D  +I LD+G LVAG KYRGEFEERLK ++ E++ A+  VIL IDE+H ++GAG  EG++DAANL KP LARG+L+CIGATTLEEYRK++EKD A ERRF  V V EPSV +T+ IL GL+++YE HH + + D AL  AA+ + +YI+ R LPDKAIDL+DEA + VR+     P     L+++
Sbjct:  189 KEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKSADN-VILVIDEVHTLIGAGAAEGAIDAANLLKPALARGELQCIGATTLEEYRKHIEKDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKE 421          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.384e-72
Identity = 137/234 (58.55%), Postives = 174/234 (74.36%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +EI   ++IL RRTKNNP LIGEPGVGKTA+ EGLAQRI   DVP  L D R++ LD+G LVAG KYRGEFEERLK ++ E+  A   VIL IDE+H ++GAG  EG++DAAN+ KP LARG+++CIGATTLEEYRK++EKD+A ERRFQ V V EPSV +T+ IL GL+++YE HH + I D AL  AA+ + +YI  R LPDKAIDL+DEA + VR+     P     L+++
Sbjct:  186 KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRINNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIIDEIRVANN-VILVIDEVHTLIGAGAAEGAIDAANILKPALARGEMQCIGATTLEEYRKHIEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIADRFLPDKAIDLIDEAGSRVRLMNSQLPPAARELDKE 418          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_STRMU (Chaperone protein clpB OS=Streptococcus mutans GN=clpB PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.397e-70
Identity = 126/234 (53.85%), Postives = 175/234 (74.79%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERK 705
            +E+   +RILSR+ KNN  L+G  GVGKTA++EG  QR+V+  VP NL    + +LD+GAL+AG KYRGEFEER KA+L ++ ++ G++ILFIDEIH ++ AGRTEGS+DAA++ KP+LARG++R IG+TT  EYR+ +E D A ERRFQ++ V EP +  T+ IL+GLK  YE  HGVR+++  L  AA LS RYI+ R LPDKA+DL+DEACA  R+   ++P ++ NL ++
Sbjct:  187 DEMNDIIRILSRKNKNNAVLVGHSGVGKTAIIEGFVQRLVKNQVPKNLQGKVIYSLDIGALLAGTKYRGEFEERFKALLNDIIDSNGQIILFIDEIHSIVSAGRTEGSVDAASILKPLLARGKIRIIGSTTHAEYRESIEYDRALERRFQRILVHEPDLDYTMEILKGLKPIYENFHGVRLEEDGLEAAASLSKRYISDRFLPDKALDLIDEACAAKRLASHAYPVQMTNLSQQ 420          
The following BLAST results are available for this feature:
BLAST of CB610803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_MYCGE7.339e-7454.58Chaperone protein clpB OS=Mycoplasma genitalium GN... [more]
CLPB2_SYNPX7.339e-7459.74Chaperone protein clpB 2 OS=Synechococcus sp. (str... [more]
CLPA_BRANA1.635e-7358.80ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE2.135e-7359.40ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CHLPN2.789e-7358.44Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_AQUAE2.789e-7358.80Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
HLYB_TREHY4.757e-7356.65Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPC_PORPU8.114e-7358.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.384e-7258.55ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_STRMU8.397e-7053.85Chaperone protein clpB OS=Streptococcus mutans GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610803 ID=CB610803; Name=CB610803; organism=Citrus sinensis; type=EST; length=721bp
GGGGAAGAAATTAGAACGTTTGTTCGAATTCTGTCAAGGAGGACTAAAAA
CAATCCTGCTCTTATTGGAGAGCCAGGAGTTGGTAAAACCGCTGTGGTGG
AAGGATTGGCTCAGAGAATTGTGCGAGGAGATGTGCCTAGCAACCTTGCT
GATGTGAGGCTCATTGCTTTGGATATGGGTGCTCTGGTTGCAGGCGCCAA
GTATAGGGGAGAGTTTGAAGAGAGGTTGAAGGCTGTTCTGAAAGAAGTAG
AAGAAGCTGAGGGAAAAGTGATTTTGTTTATTGATGAGATTCACCTTGTC
CTTGGAGCTGGTCGAACCGAGGGATCAATGGATGCTGCTAACCTCTTTAA
GCCTATGCTTGCAAGAGGCCAGCTTAGATGTATTGGTGCTACCACGCTCG
AGGAGTATAGAAAGTATGTGGAGAAAGACGCTGCATTTGAGAGAAGGTTC
CAACAAGTATATGTGGCTGAACCTAGCGTTCCTGATACAGTTAGCATTCT
TCGTGGATTGAAGGAGAAGTATGAGGGTCATCATGGTGTTCGGATTCAGG
ATCGTGCTCTTGTTGTTGCGGCACAACTATCAGCACGATATATAACAGGA
CGTCATCTCCCAGACAAGGCAATTGATTTGGTTGATGAAGCTTGCGCAAA
TGTGAGGGTNNAGCTTGATAGTCACCCAGAGGAAATTGATAATCTAGAGA
GGAAGAAAATGCCATTAAAGN
back to top