CB610803

Overview
NameCB610803
Unique NameCB610803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPE_STRPN (ATP-dependent Clp protease ATP-binding subunit clpE OS=Streptococcus pneumoniae GN=clpE PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 7.612e-63
Identity = 129/231 (55.84%), Postives = 173/231 (74.89%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAG-RTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLD-SHPEEID 690
            +EI   + IL+RRTKNNP LIGEPGVGKTAVVEGLAQ+IV GDVP  L   ++I LD+ +LV G   RG+FEER++ +++E+ + E  +ILFIDEIH ++GAG  ++G+MDA N+ KP LARG+L+ +GATTL EYR  +EKDAA ERR Q V V EP+V +T++IL+G+++KYE +H V+  D A+  AA LS RYI  R LPDKAIDL+DEA + + + L+   P+ ID
Sbjct:  137 DEIIRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRKRE-DIILFIDEIHEIVGAGSASDGNMDAGNILKPALARGELQLVGATTLNEYR-IIEKDAALERRMQPVKVDEPTVDETITILKGIQKKYEDYHHVQYTDAAIEAAATLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVID 365          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.215e-62
Identity = 131/230 (56.96%), Postives = 154/230 (66.96%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNL 696
            EI T V IL RR +NNP L GE GVGKTAVVEGLA  IV G++P  L+ V L+ LD+ AL AGA  +GEFE RLK VL E   +   VILFIDE+H ++GAG   G+ DAANL KP LARGQLR IGATT  E+++++EKD A  RRFQ + V EP     +S+LRGL    E HHGV I D AL  A +LS RYI  R LPDKAI L+D ACA V V   S P E+  L
Sbjct:  215 EISTMVDILLRRRQNNPLLTGEAGVGKTAVVEGLALAIVAGEMPPALSQVSLLTLDVVALSAGASMKGEFEARLKNVLDEAMASPTPVILFIDEVHTLVGAGGNAGTGDAANLLKPALARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVDEPDEDTAISMLRGLTPALEKHHGVWIMDEALQAAVRLSHRYIPARQLPDKAISLLDTACARVAVAQFSQPAELQQL 444          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.323e-58
Identity = 118/224 (52.68%), Postives = 155/224 (69.20%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT----EGS-MDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRV 660
            +E++  ++IL RRTKNNP L+GE GVGKTA+ EGLA  I     P  L   R+++LD+G L+AGAK RGE E R+ A++ EV+++ GKVILFIDE+H ++G+G      +GS +D ANL KP L RG+L+CI +TTL+E+R   EKD A  RRFQ V + EPS  D V IL GL+EKYE HH  +    A+  A  LS+RYI  R LPDKAIDL+DEA +  R+
Sbjct:  295 KEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEASAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKS-GKVILFIDEVHTLIGSGTVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPSEEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRARI 517          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAAW (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MW2) GN=clpL PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 114/245 (46.53%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E++N +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAAS (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MSSA476) GN=clpL PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 114/245 (46.53%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E++N +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAAN (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain N315) GN=clpL PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 114/245 (46.53%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E++N +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAAM (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpL PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 114/245 (46.53%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E++N +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAAC (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain COL) GN=clpL PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 114/245 (46.53%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E++N +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain NCTC 8325) GN=clpL PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 114/245 (46.53%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E++N +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain USA300) GN=clpL PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.537e-55
Identity = 113/245 (46.12%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KD+A  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E++N +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISVDISSLEAGTQYRGAFEENIQKLIEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDSALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAVDKVETEKRISELENDKRK 348          
The following BLAST results are available for this feature:
BLAST of CB610803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPE_STRPN7.612e-6355.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_YEREN2.215e-6256.96Chaperone protein clpB OS=Yersinia enterocolitica ... [more]
ERD1_ARATH4.323e-5852.68ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPL_STAAW6.901e-5646.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAS6.901e-5646.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAN6.901e-5646.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAM6.901e-5646.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAC6.901e-5646.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAA86.901e-5646.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAA31.537e-5546.12ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610803 ID=CB610803; Name=CB610803; organism=Citrus sinensis; type=EST; length=721bp
GGGGAAGAAATTAGAACGTTTGTTCGAATTCTGTCAAGGAGGACTAAAAA
CAATCCTGCTCTTATTGGAGAGCCAGGAGTTGGTAAAACCGCTGTGGTGG
AAGGATTGGCTCAGAGAATTGTGCGAGGAGATGTGCCTAGCAACCTTGCT
GATGTGAGGCTCATTGCTTTGGATATGGGTGCTCTGGTTGCAGGCGCCAA
GTATAGGGGAGAGTTTGAAGAGAGGTTGAAGGCTGTTCTGAAAGAAGTAG
AAGAAGCTGAGGGAAAAGTGATTTTGTTTATTGATGAGATTCACCTTGTC
CTTGGAGCTGGTCGAACCGAGGGATCAATGGATGCTGCTAACCTCTTTAA
GCCTATGCTTGCAAGAGGCCAGCTTAGATGTATTGGTGCTACCACGCTCG
AGGAGTATAGAAAGTATGTGGAGAAAGACGCTGCATTTGAGAGAAGGTTC
CAACAAGTATATGTGGCTGAACCTAGCGTTCCTGATACAGTTAGCATTCT
TCGTGGATTGAAGGAGAAGTATGAGGGTCATCATGGTGTTCGGATTCAGG
ATCGTGCTCTTGTTGTTGCGGCACAACTATCAGCACGATATATAACAGGA
CGTCATCTCCCAGACAAGGCAATTGATTTGGTTGATGAAGCTTGCGCAAA
TGTGAGGGTNNAGCTTGATAGTCACCCAGAGGAAATTGATAATCTAGAGA
GGAAGAAAATGCCATTAAAGN
back to top