CB610803

Overview
NameCB610803
Unique NameCB610803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAAR (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MRSA252) GN=clpL PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.008e-55
Identity = 113/245 (46.12%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E+++ +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISIDISSLEAGTQYRGAFEENIQKLVEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNIMKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFETHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAIDKVTTEKRISELEHDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_STAAB (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpL PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.622e-55
Identity = 113/245 (46.12%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT---EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV--------RVXLDSHPEEIDNLERK 705
            +EI+    +LSRRTKNNP L+GE GVGKTA+VEGLAQ IV G+VP+ + D  +I++D+ +L AG +YRG FEE ++ +++ V+ ++  V LF DEIH ++G+G T    GS   +++ KP L+RG++  IGATT +EYR  + KDAA  RRF +V V EPS  DTV IL+G++EK+E HH V++ D  L     LS +YI  R LPDKAID++D   A++        +V  +    E+++ +RK
Sbjct:  105 KEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISIDISSLEAGTQYRGAFEENIQKLVEGVKSSQNAV-LFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFETHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITAAHLSAQSPAIDKVATEKRISELEHDKRK 348          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPC_STRP6 (Probable ATP-dependent Clp protease ATP-binding subunit OS=Streptococcus pyogenes serotype M6 GN=clpC PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.473e-55
Identity = 110/220 (50.00%), Postives = 151/220 (68.64%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTE---GSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANV 654
            +EI+    IL+RRTKNNP L+G+ GVGKTAV+EGLAQ IV GDVP+ + +  ++++D+ +L AG +YRG FEE ++ +++EV+EA G +ILF DEIH ++GAG T    GS   A++ KP L+RG+L  IGATT +EYR  + K+AA  RRF +V V  PS  DT  IL G++  YE HH + + D  L  A   S +YI  R LPDKAIDL+D   A++
Sbjct:  100 KEIQDTAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIVNGDVPAAIKNKEIVSIDISSLEAGTQYRGSFEETIQNLIQEVKEA-GNIILFFDEIHQIVGAGATSSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHHITLPDNVLKAAVDYSIQYIPQRSLPDKAIDLLDMTAAHL 318          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPL_LACLA (ATP-dependent Clp protease ATP-binding subunit clpL OS=Lactococcus lactis subsp. lactis GN=clpL PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.730e-51
Identity = 111/241 (46.06%), Postives = 149/241 (61.83%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS--MDAANLFKPMLAR-GQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            EI+   +   RR K NP L+GE GVGKTAVVEGLAQRIV G VP  + D  + ++D+ +L AG +YRG FEE +K +++EV+ A G +ILFIDEIH +LG G   G      A++ KP+L    +L  IGATT +EYR  + K+AA  RRF  V + EP+  DT+ IL+G+KE YE HH V + D     A   S +YI  RHLPDKAIDL+D+  +       +  E +D   + K  L+
Sbjct:  161 EIQKPAQKFCRRRKKNPLLVGESGVGKTAVVEGLAQRIVAGKVPETIQDKEIYSIDLSSLEAGTQYRGSFEENIKQLVEEVKAA-GNIILFIDEIHQILGTGALAGEEVKGLADIIKPLLCHVAKLSVIGATTQDEYRNTILKNAALARRFNDVVINEPTAADTLRILQGIKELYEKHHHVVLPDDEKKAAVDYSIKYIHNRHLPDKAIDLIDDCGSFSGKNSQTDVETLDQRLKNKRQLR 400          
The following BLAST results are available for this feature:
BLAST of CB610803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPL_STAAR2.008e-5546.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAB2.622e-5546.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STRP64.473e-5550.00Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPL_LACLA8.730e-5146.06ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610803 ID=CB610803; Name=CB610803; organism=Citrus sinensis; type=EST; length=721bp
GGGGAAGAAATTAGAACGTTTGTTCGAATTCTGTCAAGGAGGACTAAAAA
CAATCCTGCTCTTATTGGAGAGCCAGGAGTTGGTAAAACCGCTGTGGTGG
AAGGATTGGCTCAGAGAATTGTGCGAGGAGATGTGCCTAGCAACCTTGCT
GATGTGAGGCTCATTGCTTTGGATATGGGTGCTCTGGTTGCAGGCGCCAA
GTATAGGGGAGAGTTTGAAGAGAGGTTGAAGGCTGTTCTGAAAGAAGTAG
AAGAAGCTGAGGGAAAAGTGATTTTGTTTATTGATGAGATTCACCTTGTC
CTTGGAGCTGGTCGAACCGAGGGATCAATGGATGCTGCTAACCTCTTTAA
GCCTATGCTTGCAAGAGGCCAGCTTAGATGTATTGGTGCTACCACGCTCG
AGGAGTATAGAAAGTATGTGGAGAAAGACGCTGCATTTGAGAGAAGGTTC
CAACAAGTATATGTGGCTGAACCTAGCGTTCCTGATACAGTTAGCATTCT
TCGTGGATTGAAGGAGAAGTATGAGGGTCATCATGGTGTTCGGATTCAGG
ATCGTGCTCTTGTTGTTGCGGCACAACTATCAGCACGATATATAACAGGA
CGTCATCTCCCAGACAAGGCAATTGATTTGGTTGATGAAGCTTGCGCAAA
TGTGAGGGTNNAGCTTGATAGTCACCCAGAGGAAATTGATAATCTAGAGA
GGAAGAAAATGCCATTAAAGN
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