CB610803

Overview
NameCB610803
Unique NameCB610803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.735e-89
Identity = 160/239 (66.95%), Postives = 197/239 (82.43%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++L RRTKNNP LIGEPGVGKTA+VEGLAQRIV G+VP  L + R+++LDM AL+AGAKYRGEFEERLKAVLKE+ + EG+ I+FIDE+H ++GAG+ EG+MDA N+ KP LARG+L C+GATTL+EYRKYVEKDAA ERRFQ+V V EP V  T++ILRGL+EKYE HHGV I D A+V AA+LS RYIT R LPDKAIDL+DEA A +R+  DS PE +D L+R+ + LK
Sbjct:  185 DEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPETLKNKRVLSLDMAALLAGAKYRGEFEERLKAVLKELAQDEGRTIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRKYVEKDAALERRFQKVLVDEPGVEATIAILRGLQEKYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAARIRMEQDSKPEVMDKLDRRLIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.184e-89
Identity = 160/239 (66.95%), Postives = 197/239 (82.43%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++L RRTKNNP +IGEPGVGKTA+VEGLAQRIV  +VP  L   R+++LDMGALVAGAKYRGEFEERLK+VL E+ + EG VILFIDE+H ++GAG+ EGSMDA N+ KP LARG+L C+GATTL+EYR+Y+EKDAA ERRFQ+V V EP+V DTV+ILRGLKE+YE HH V I D A+V AA LS RYI+ R LPDKAIDL+DEA +++R+ +DS PE +D LERK + LK
Sbjct:  185 DEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIVNNEVPEGLRGRRVLSLDMGALVAGAKYRGEFEERLKSVLNELAKEEGNVILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPTVEDTVAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRLQIDSKPESLDKLERKIIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_MYCLE (Chaperone protein clpB OS=Mycobacterium leprae GN=clpB PE=3 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.184e-89
Identity = 161/233 (69.10%), Postives = 195/233 (83.69%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRT-EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLER 702
            EIR  V++LSRRTKNNP LIGEPGVGKTA+VEGLAQRIV GDVP +L D  L+ALD+G++VAGAKYRGEFE+RLK VL +++ + G++I FIDE+H ++GAG T E +MDA N+ KPMLARG+LR +GATTL+EYR+Y+EKDAA ERRFQQ++V EPSV DTV ILRGLK++YE HHGVRI D ALV AA LS RYIT R LPDKAIDLVDEA + +R+ +DS P EID +ER
Sbjct:  186 EIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKTLVALDLGSMVAGAKYRGEFEQRLKVVLDDIKFSAGQIITFIDELHTIVGAGATGESAMDAGNMIKPMLARGELRLVGATTLDEYRRYIEKDAALERRFQQIFVGEPSVEDTVGILRGLKDRYEVHHGVRITDSALVAAAALSDRYITARFLPDKAIDLVDEAASRLRMEIDSRPVEIDEVER 418          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.077e-89
Identity = 158/239 (66.11%), Postives = 196/239 (82.01%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            EEIR  +++  RRTKNNP LIGEPGVGKTA+VEGLA RIV  DVP  L D +++ALD+GAL+AG K+RGEFEERLKAV+ E+  AEGKVILFIDE+H ++GAG T G+MDA+NL KP LARG++RCIGATTL+EYR+++EKD A  RRFQ V++++P+  DT+SILRGLKE+YE HHG+RI D A++ AA LS RYIT R LPDKAIDL+DEA + VR+ +DS PE ID LERK + LK
Sbjct:  187 EEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVANDVPLGLHDAKVLALDLGALIAGTKFRGEFEERLKAVINELSRAEGKVILFIDELHTLVGAGATSGAMDASNLLKPALARGEVRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRFLPDKAIDLIDEAASRVRIEMDSKPEVIDELERKVIQLK 425          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIN (Chaperone protein clpB OS=Leptospira interrogans GN=clpB PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.077e-89
Identity = 156/239 (65.27%), Postives = 200/239 (83.68%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            EEIR  +++LSRRTKNNP LIGEPGVGKTA+VEGLA +IV+G+VP  + +  L  LD+G+++AGAKYRGEFE+RLKA+L EV+ ++G+VILFIDEIH ++GAG TEG++DA+N+ KPMLARG+LRCIGATTL+EY+KY+EKDAA ERRFQ VYV EPSV +TV+ILRGLK +YE HHG+RI D AL+ AA LS RYI+ R LPDKA+DL+DEA + +R+ +DS PEE+D   ++   LK
Sbjct:  187 EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLANKIVQGEVPEGIKNKTLYTLDLGSMIAGAKYRGEFEDRLKALLDEVKSSDGEVILFIDEIHTLVGAGATEGALDASNMLKPMLARGELRCIGATTLKEYQKYIEKDAALERRFQPVYVKEPSVEETVTILRGLKGRYELHHGIRILDSALIAAATLSNRYISDRFLPDKAVDLIDEASSKMRIEIDSMPEELDRANKRIQSLK 425          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIC (Chaperone protein clpB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpB PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.077e-89
Identity = 156/239 (65.27%), Postives = 200/239 (83.68%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            EEIR  +++LSRRTKNNP LIGEPGVGKTA+VEGLA +IV+G+VP  + +  L  LD+G+++AGAKYRGEFE+RLKA+L EV+ ++G+VILFIDEIH ++GAG TEG++DA+N+ KPMLARG+LRCIGATTL+EY+KY+EKDAA ERRFQ VYV EPSV +TV+ILRGLK +YE HHG+RI D AL+ AA LS RYI+ R LPDKA+DL+DEA + +R+ +DS PEE+D   ++   LK
Sbjct:  187 EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLANKIVQGEVPEGIKNKTLYTLDLGSMIAGAKYRGEFEDRLKALLDEVKSSDGEVILFIDEIHTLVGAGATEGALDASNMLKPMLARGELRCIGATTLKEYQKYIEKDAALERRFQPVYVKEPSVEETVTILRGLKGRYELHHGIRILDSALIAAATLSNRYISDRFLPDKAVDLIDEASSKMRIEIDSMPEELDRANKRIQSLK 425          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.055e-88
Identity = 155/239 (64.85%), Postives = 199/239 (83.26%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++L RRTKNNP +IG+PGVGKTA+VEGLAQRIV G+VP  L   R+++LDMG+L+AGAKYRGEFEERLK+VL E+ + EG VILFIDE+H ++GAG+ EGSMDA N+ KP LARG+L C+GATTL+EYR+Y+EKDAA ERRFQ+V V EP+V DT++ILRGLKE+YE HH V I D A+V AA+LS RY++ R LPDKAIDL+DEA +++R+ +DS PE +D LER+ + LK
Sbjct:  185 DEIRRTIQVLQRRTKNNPVIIGQPGVGKTAIVEGLAQRIVNGEVPEGLRHKRVLSLDMGSLIAGAKYRGEFEERLKSVLNELSQEEGSVILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAARLSHRYVSDRQLPDKAIDLIDEAASSIRMQIDSKPESLDRLERRIIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.378e-88
Identity = 158/239 (66.11%), Postives = 197/239 (82.43%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  ++IL RRTKNNP LIGEPGVGKTA+VEGLAQRI+ G+VP +L + R++ LDM  L+AGAKYRGEFEERLKAVL ++ + EG+ ILFIDEIH ++GAG+ EG++DA N+ KP LARG+L CIGATTL+EYRKY+EKDAA ERRFQ+V V EPSV  T++ILRGL+EKYE HHGV I D A+V AA+LS RYIT R LPDKAIDL+DEA A +++ +DS PE +D L+R+ + LK
Sbjct:  184 DEIRRAIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPESLKNKRVLVLDMAGLLAGAKYRGEFEERLKAVLNDIAKEEGQTILFIDEIHTMVGAGKAEGAIDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEATIAILRGLQEKYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAARIKMEIDSKPEAMDKLDRRLIQLK 422          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.378e-88
Identity = 156/239 (65.27%), Postives = 196/239 (82.01%), Query Frame = 1
Query:    4 EEIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            +EIR  +++L RRTKNNP LIGEPGVGKTA+ EGLAQRI+ G+VP  L   RL++LDMGAL+AGAKYRGEFEERLK++L E+ + EG++ILFIDE+H ++GAG+ EGSMDA N+ KP LARG+L C+GATTL EYR+Y+EKDAA ERRFQ+V V EPS  DT++ILRGLKE+YE HH V I D A++ AA+LS RYIT R LPDKAIDL+DEA + +R+ +DS PE +D LER+ + LK
Sbjct:  185 DEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLRGKRLLSLDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEVLDRLERRLIQLK 423          
BLAST of CB610803 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 4.008e-88
Identity = 160/238 (67.23%), Postives = 196/238 (82.35%), Query Frame = 1
Query:    7 EIRTFVRILSRRTKNNPALIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVXLDSHPEEIDNLERKKMPLK 720
            EIR  +++LSRRTKNNP LIG+PGVGKTA+ EGLA RI  GDVP +L   ++++LDMGALVAGAK+RG+FEERLK+VL+EV++++GKVILFIDE+HLV+GAG  EGS DAANL KP LARG LRCIGATTL+EYR+++EKDAA ERRFQ V+V EP+V DTV+ILRGLK +YE HHGVRI D ALV AA LS RYI  R LPDKAIDL+DEA + + +  +S PE ID L+R+   L+
Sbjct:  187 EIRRVIQVLSRRTKNNPVLIGQPGVGKTAIAEGLALRIFEGDVPQSLKGKKVVSLDMGALVAGAKFRGDFEERLKSVLREVKDSDGKVILFIDELHLVVGAGNAEGSADAANLLKPELARGALRCIGATTLDEYRQHIEKDAALERRFQPVFVGEPNVEDTVAILRGLKPRYESHHGVRITDSALVAAANLSDRYIADRFLPDKAIDLIDEAASRLAMEKESVPEPIDRLQRRLRQLE 424          
The following BLAST results are available for this feature:
BLAST of CB610803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_NITEU4.735e-8966.95Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_VIBPA6.184e-8966.95Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_MYCLE6.184e-8969.10Chaperone protein clpB OS=Mycobacterium leprae GN=... [more]
CLPB_WOLPM8.077e-8966.11Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_LEPIN8.077e-8965.27Chaperone protein clpB OS=Leptospira interrogans G... [more]
CLPB_LEPIC8.077e-8965.27Chaperone protein clpB OS=Leptospira interrogans s... [more]
CLPB_PHOPR1.055e-8864.85Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_RALSO1.378e-8866.11Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_PSESM1.378e-8865.27Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_RHOBA4.008e-8867.23Chaperone protein clpB OS=Rhodopirellula baltica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610803 ID=CB610803; Name=CB610803; organism=Citrus sinensis; type=EST; length=721bp
GGGGAAGAAATTAGAACGTTTGTTCGAATTCTGTCAAGGAGGACTAAAAA
CAATCCTGCTCTTATTGGAGAGCCAGGAGTTGGTAAAACCGCTGTGGTGG
AAGGATTGGCTCAGAGAATTGTGCGAGGAGATGTGCCTAGCAACCTTGCT
GATGTGAGGCTCATTGCTTTGGATATGGGTGCTCTGGTTGCAGGCGCCAA
GTATAGGGGAGAGTTTGAAGAGAGGTTGAAGGCTGTTCTGAAAGAAGTAG
AAGAAGCTGAGGGAAAAGTGATTTTGTTTATTGATGAGATTCACCTTGTC
CTTGGAGCTGGTCGAACCGAGGGATCAATGGATGCTGCTAACCTCTTTAA
GCCTATGCTTGCAAGAGGCCAGCTTAGATGTATTGGTGCTACCACGCTCG
AGGAGTATAGAAAGTATGTGGAGAAAGACGCTGCATTTGAGAGAAGGTTC
CAACAAGTATATGTGGCTGAACCTAGCGTTCCTGATACAGTTAGCATTCT
TCGTGGATTGAAGGAGAAGTATGAGGGTCATCATGGTGTTCGGATTCAGG
ATCGTGCTCTTGTTGTTGCGGCACAACTATCAGCACGATATATAACAGGA
CGTCATCTCCCAGACAAGGCAATTGATTTGGTTGATGAAGCTTGCGCAAA
TGTGAGGGTNNAGCTTGATAGTCACCCAGAGGAAATTGATAATCTAGAGA
GGAAGAAAATGCCATTAAAGN
back to top