CB610808

Overview
NameCB610808
Unique NameCB610808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.422e-51
Identity = 104/121 (85.95%), Postives = 107/121 (88.43%), Query Frame = 2
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.440e-50
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 2
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.187e-50
Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 2
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FP  SVELYAE+V  RGLCA+  AESL YKLLGGLA RRACYG
Sbjct:    1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 121          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.645e-48
Identity = 98/117 (83.76%), Postives = 103/117 (88.03%), Query Frame = 2
Query:  131 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRF  PE SVELYAE+V  RGLCA+  AESL YKL+GGLA RRACYG
Sbjct:    6 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 122          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.646e-46
Identity = 94/120 (78.33%), Postives = 104/120 (86.67%), Query Frame = 2
Query:  122 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            A  ISKKRKFVADGVF+AELNE  TREL+E+GYSG EVRVTP R+EIIIRAT TQ+VLGEKGRRIRELT++VQKRFKF EN+VELYAE+V NRGLCA+   ESL YKLL GLA RRA YG
Sbjct:    4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYG 123          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 6.877e-45
Identity = 93/122 (76.23%), Postives = 101/122 (82.79%), Query Frame = 2
Query:  116 NMATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            N    ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGRRIRELT++VQKRF F    +ELYAE+V  RGLCA+  AESL YKL GGLA RRACYG
Sbjct:    2 NANLPISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYG 123          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.873e-42
Identity = 86/117 (73.50%), Postives = 98/117 (83.76%), Query Frame = 2
Query:  131 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            ++KK+K V  G+F AELN  L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GRRI+ELTSVVQKRF F E SVELYAE+V+NRGLCA+   ESL YKL+GGLA RRACYG
Sbjct:    7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYG 123          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 168.318 bits (425), Expect = 1.585e-41
Identity = 86/121 (71.07%), Postives = 99/121 (81.82%), Query Frame = 2
Query:  119 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACYG 481
            M   ISKKRK VADGVF+AELNE  TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLGE GRRI ELT +VQKRFK+   ++ LYAERV +RGL A+  AES+ +KLL GLA RRA YG
Sbjct:    1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYG 121          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.698e-35
Identity = 78/122 (63.93%), Postives = 95/122 (77.87%), Query Frame = 2
Query:  116 NMATQISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            N + QISKKRKFVADGVF AELNE+ TRE  +D GYSGVE++ +P  TEIIIRA++TQ V+G   RRI+EL S+VQKRF F E +V L+AE++ NRGLCA+  AESL  KLL GL  R+ACY
Sbjct:    2 NSSLQISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACY 123          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.549e-15
Identity = 38/109 (34.86%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  146 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRA 472
            +F+ +G+  AEL E   + L  +G+S +E+R+     +II++  +    +GEK  R+R+   +  +R + P+ SVE+  E+V+ +GLCA+I A  +  K+LGG+  RRA
Sbjct:   21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRA 129          
The following BLAST results are available for this feature:
BLAST of CB610808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS3_PONAB6.422e-5185.9540S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS32_XENLA2.440e-5084.3040S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS3_ICTPU3.187e-5084.3040S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE6.645e-4883.7640S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_SCHPO3.646e-4678.3340S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_DROME6.877e-4576.2340S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL1.873e-4273.5040S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_YEAST1.585e-4171.0740S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI1.698e-3563.9340S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU2.549e-1534.8640S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610808 ID=CB610808; Name=CB610808; organism=Citrus sinensis; type=EST; length=484bp
GGGGATACTGGGATATAAGCAGGCGAGTATATATTATCGCAAACATTAGG
GTTTACGGACTAGAGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGG
TGTTGGATTCTGAGAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATT
TGTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAG
AGCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTG
CGCACTGAGATCATCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGA
GAAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCA
AGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAGAGTTAACAATAGG
GGTCTCTGTGCCATGATCNAGGCTGAGTCTCTGCTTTACAAGCTTCTTGG
AGGTCTCGCTGGTCGAAGGGCATGCTATGGTGGG
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