CB610808

Overview
NameCB610808
Unique NameCB610808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  140 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E + N  L A + A  L   L  G+  RRA Y
Sbjct:    4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAY 114          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  140 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E + N  L A + A  L   L  G+  RRA Y
Sbjct:    4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAY 114          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  140 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++ I A     V+G  GRRIRELT +++K+F      +E+  E + N  L A + A  L   L  G+  RRA Y
Sbjct:    4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAY 114          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  140 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            +R F+ +G+    ++E L +EL   GY G++++ TP+ T+++I   R   V+G  GR+IRELT ++++RF      +E+  E + N    A + A  L   L  G+  RRA Y
Sbjct:    4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAY 114          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  140 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++K+F      +E+  E + N  L A + A  L   L  G+  RRA Y
Sbjct:    4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAY 114          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  140 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  + + N  L A + A  +   L  G+  RRA Y
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAY 114          
BLAST of CB610808 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  140 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAMIXAESLLYKLLGGLAGRRACY 478
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  + + N  L A + A  +   L  G+  RRA Y
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAY 114          
The following BLAST results are available for this feature:
BLAST of CB610808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS3_THEON1.184e-1236.2830S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THEGJ1.184e-1236.2830S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_PYRKO2.638e-1236.2830S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_THESM3.445e-1233.6330S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_PYRFU3.445e-1236.2830S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_PYRHO6.496e-1132.7430S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_PYRAB6.496e-1132.7430S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_E01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610808 ID=CB610808; Name=CB610808; organism=Citrus sinensis; type=EST; length=484bp
GGGGATACTGGGATATAAGCAGGCGAGTATATATTATCGCAAACATTAGG
GTTTACGGACTAGAGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGG
TGTTGGATTCTGAGAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATT
TGTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAG
AGCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTG
CGCACTGAGATCATCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGA
GAAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCA
AGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAGAGTTAACAATAGG
GGTCTCTGTGCCATGATCNAGGCTGAGTCTCTGCTTTACAAGCTTCTTGG
AGGTCTCGCTGGTCGAAGGGCATGCTATGGTGGG
back to top