CB610812 | Citrus Genome Database

Overview


Name	CB610812
Unique Name	CB610812
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	800

Libraries


Library Name	Type
Mature Albedo	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_NEIMB (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup B GN=rpsM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.019e-23
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3

Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            RR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:   70 RREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120

HSP 2 Score: 60.4622 bits (145), Expect = 5.019e-23
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQI--LVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDL
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDL 69

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_NEIMA (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup A GN=rpsM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.019e-23
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3

Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            RR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:   70 RREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120

HSP 2 Score: 60.4622 bits (145), Expect = 5.019e-23
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQI--LVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDL
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDL 69

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_NEIM0 (30S ribosomal protein S13 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.019e-23
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3

Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            RR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:   70 RREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120

HSP 2 Score: 60.4622 bits (145), Expect = 5.019e-23
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQI--LVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDL
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDL 69

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_NEIG1 (30S ribosomal protein S13 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.019e-23
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3

Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            RR   ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct:   70 RREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120

HSP 2 Score: 60.4622 bits (145), Expect = 5.019e-23
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQI--LVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV IPNN  I   LQ I+G+G TRA+ I    ++  + K  KD+ E +L  +RD+V+KY +EGDL
Sbjct:    2 ARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK-AKDLDETQLDALRDQVAKYEVEGDL 69

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_MESFL (30S ribosomal protein S13 OS=Mesoplasma florum GN=rpsM PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.019e-23
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 683
            RR  +L I+RL EI CYRG+RH +GLP RGQ +K N RT+KG R  +A KKK
Sbjct:   70 RREVSLNIKRLMEIGCYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121

HSP 2 Score: 63.1586 bits (152), Expect = 5.019e-23
Identity = 28/68 (41.18%), Postives = 48/68 (70.59%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GVEIPN KR+  SL YI+G+G + ++++L  L +   + T+D++EE++  I  E+S + +EG+L
Sbjct:    2 ARISGVEIPNEKRVVISLTYIYGIGLSTSQKVLSKLNISEDVRTRDLTEEQIKAISTEISNFKVEGEL 69

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.019e-23
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 683
            RR   L I+RL EI  YRG+RH +GLP RGQ T+NN  T+KGK  +IAGKKK
Sbjct:   70 RREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

HSP 2 Score: 63.929 bits (154), Expect = 5.019e-23
Identity = 27/68 (39.71%), Postives = 53/68 (77.94%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ G++IP++KR+  +L YI+G+G+  +++IL +L + + I  K+++E++L ++R E++KY +EGDL
Sbjct:    2 ARIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITKYSVEGDL 69

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.411e-23
Identity = 36/76 (47.37%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  220 GLSIQCARVGGV---EIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 438
            G+ +Q   +GG    EIP+NKR+ Y+LQ +HG+GR++A+ I+ +L +ENK  KD+S+ EL +IR+ +SKY+I  DL
Sbjct:   23 GVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDL 98

HSP 2 Score: 51.6026 bits (122), Expect = 6.411e-23
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  549 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 659
            + RL  IQCYRGIRH+  LPCRGQ T  N RT + ++
Sbjct:  106 VGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRK 142

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RR13_PORPU (30S ribosomal protein S13, chloroplastic OS=Porphyra purpurea GN=rps13 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.487e-23
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 3

Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692
            +RF +++I+RL EI  YRG RH  GLP RGQ T+ N RT +G +  +AGKKKAPR
Sbjct:   71 KRFESMSIKRLMEISTYRGRRHRLGLPLRGQRTRTNARTRRGGKKTVAGKKKAPR 125

HSP 2 Score: 59.6918 bits (143), Expect = 6.487e-23
Identity = 28/69 (40.58%), Postives = 52/69 (75.36%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-SKYMIEGDL 438
            AR+ GV++P NKRIE +L YI+G+G +R+++IL    ++  I  ++++++++++IR+ + S Y IEGDL
Sbjct:    2 ARIAGVDLPRNKRIEIALTYIYGIGLSRSKEILKKTNIDADIRCQNLNDQQIVSIREILESSYQIEGDL 70

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_GRAFK (30S ribosomal protein S13 OS=Gramella forsetii (strain KT0803) GN=rpsM PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.507e-23
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 3

Query:  543 LAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692
            ++I+RL +I CYRGIRH  GLP RGQ TKNN RT KG+R  +A KKKA +
Sbjct:   75 ISIKRLMDIGCYRGIRHRAGLPLRGQRTKNNSRTRKGRRKTVANKKKATK 124

HSP 2 Score: 59.6918 bits (143), Expect = 6.507e-23
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV+IP  KR   +L YI G+GR+RA++IL   K+ E+K   D  ++E+  IR+ V ++ IEG+L
Sbjct:    2 ARIAGVDIPKQKRGVIALTYIFGIGRSRAQEILAQAKVDESKKVSDWDDDEIGKIREAVGQFTIEGEL 69

[Close]

BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_AZOSE (30S ribosomal protein S13 OS=Azoarcus sp. (strain EbN1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.532e-23
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 3

Query:  504 FFIWGFLQRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            F + G L RR   + I+RL ++ CYRG+RH +GLP RGQ T+ N RT KG R AIAGKK
Sbjct:   63 FIVEGDL-RRETTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120

HSP 2 Score: 62.003 bits (149), Expect = 6.532e-23
Identity = 29/68 (42.65%), Postives = 48/68 (70.59%), Query Frame = 1

Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV IPN+K  E +L  I+G+GR+RA++I     +   +  KD++E ++  +RDEV+K+++EGDL
Sbjct:    2 ARIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAANVVRSVKMKDLTESDMERLRDEVAKFIVEGDL 69

The following BLAST results are available for this feature:

BLAST of CB610812 vs. ExPASy Swiss-Prot

BLAST of CB610812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RS13_NEIMB	5.019e-23	60.78	30S ribosomal protein S13 OS=Neisseria meningitidi...	[more]
RS13_NEIMA	5.019e-23	60.78	30S ribosomal protein S13 OS=Neisseria meningitidi...	[more]
RS13_NEIM0	5.019e-23	60.78	30S ribosomal protein S13 OS=Neisseria meningitidi...	[more]
RS13_NEIG1	5.019e-23	60.78	30S ribosomal protein S13 OS=Neisseria gonorrhoeae...	[more]
RS13_MESFL	5.019e-23	59.62	30S ribosomal protein S13 OS=Mesoplasma florum GN=...	[more]
RS13_PHYAS	5.019e-23	61.54	30S ribosomal protein S13 OS=Phytoplasma australie...	[more]
RT13_SOYBN	6.411e-23	47.37	Small ribosomal subunit protein S13, mitochondrial...	[more]
RR13_PORPU	6.487e-23	56.36	30S ribosomal protein S13, chloroplastic OS=Porphy...	[more]
RS13_GRAFK	6.507e-23	62.00	30S ribosomal protein S13 OS=Gramella forsetii (st...	[more]
RS13_AZOSE	6.532e-23	55.93	30S ribosomal protein S13 OS=Azoarcus sp. (strain ...	[more]

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Properties


Property Name	Value
Genbank description	ALBEDO0002_IVaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_E08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB610812 ID=CB610812; Name=CB610812; organism=Citrus sinensis; type=EST; length=800bp
GGGGAAGTTCCTCGCCTTTGCATCTCTCCACTCGAGCTTGCCGTTAGTCA
GATCTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAATGG
TACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCAAC
GGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTTTC
CAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGGAG
GTGTCGAGATTCCAAATAACAAGCGAATTGAGTACTCGCTTCAGTACATT
CATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAAAT
GGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAATTC
GTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGGTAATAATTCCT
TATTTCTTCGTTAGAGGCACCTTTTGAGCTTTGATTTCGCTGTTTGAGAA
TTTTTTTTTATTTGGGGGTTTTTGCAGAGGCGGTTCAATGCACTTGCTAT
TAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATTCGCCATATTCAGG
GCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTGTCGCACATTGAAG
GGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCCCTCGTTAANNAAA
TGACTTTTTTCCTGTTTATTTAATGGATGATGTTGATTTTCTATTGTATT
GAATTTGAATGTGAATCATTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA