CB610815

Overview
NameCB610815
Unique NameCB610815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.059e-37
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  181 STGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            +T GQVI C+AAVAWE  K LVIE+V+VAPPQAGEVR+KILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT ++PGDH +P +  EC +C  CK
Sbjct:    3 NTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCK 107          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.218e-37
Identity = 71/105 (67.62%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            MST GQ+I CKAAVAWE  K LVIE+V+VAPPQ  EVRIKILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT++QPGDH +P +  EC +C+ C
Sbjct:    1 MSTTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHC 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.900e-37
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  181 STGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            +T GQ+I C+AAVAWE  K LVIE+V+VAPPQAGEVR+KILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT ++PGDH +P +  EC +C  CK
Sbjct:    3 NTVGQIIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCK 107          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 71/106 (66.98%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            M+T G+VI CKAAVAWE  K L IE+V+VAPPQA EVR+KIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEGVTE+ PGDH +P +  EC DC  CK
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKDCAHCK 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.518e-36
Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 1
Query:  181 STGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            +T G+ I C+AAVAWE  K L +E+V+VAPPQAGEVRIKI+ T +CHTDAYT SG DPEG+FP +LGHE AGIVESVGEGVT+ + GD  IP Y  +C +CKFCK
Sbjct:    1 ATVGKTIRCRAAVAWEAGKPLSMEEVEVAPPQAGEVRIKIVATGICHTDAYTLSGSDPEGVFPSVLGHEGAGIVESVGEGVTKFKSGDAVIPLYVPQCGECKFCK 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.589e-36
Identity = 70/105 (66.67%), Postives = 80/105 (76.19%), Query Frame = 1
Query:  181 STGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            +T GQVI C+AAVAWE  K LVIE+V+VAPPQA EVRIKILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT+++ GDH +P +  EC DC  CK
Sbjct:    3 NTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCK 107          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.589e-36
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            M+T G+VI CKAAVAWE  K L IE+V+VAPPQA EVR+KIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEGVTE+ PGDH +P +  EC +C  CK
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCK 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.589e-36
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            M+T G+VI CKAAVAWE  K L IE+V+VAPPQA EVR+KIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEGVTE+ PGDH +P +  EC +C  CK
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCK 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.417e-36
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCKYWK 504
            MS  G+ ITCKAAVAW   + L IED+QVAPP+A EVR+K+ ++A+CHTDAYT SG DPEG FP +LGHE AGIVES+GEGV  V+PGDH I  Y  EC +CKFC+  K
Sbjct:    1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGK 109          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.417e-36
Identity = 70/105 (66.67%), Postives = 80/105 (76.19%), Query Frame = 1
Query:  181 STGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            +T GQVI CKAAVAWE  K LV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVTE+ PGDH +P +  EC DC  CK
Sbjct:    3 TTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCK 107          
The following BLAST results are available for this feature:
BLAST of CB610815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
ADH1_TRIRP3.059e-3766.67Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH1_ARATH5.218e-3767.62Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH1_PEA8.900e-3765.71Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
ADH3_HORVU1.162e-3666.98Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]
ADHL_GADMO1.518e-3666.67Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADH_MALDO2.589e-3666.67Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADH2_ORYSJ2.589e-3666.04Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI2.589e-3666.04Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
FADH1_SCHPO4.417e-3664.22Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH2_SOLTU4.417e-3666.67Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_C02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610815 ID=CB610815; Name=CB610815; organism=Citrus sinensis; type=EST; length=538bp
GGGGGGTGTGTTTGGCAGATTCAATAATAGAGGGAGCTACTTTAGAGATC
NCTCACCTCTGTTGCCGGCAGCCACTCTCAGATCGTGTCACGTCCCTTTT
GAATAATAATATCTAACTGCATCTACTCGTTTCTTTTTGTGGTCTGTTTT
TCATTCTCATTTTCATTGTCAGCAGCCATGTCTACTGGAGGTCAAGTCAT
CACATGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGGCATTGGTGATTG
AGGATGTGCAGGTTGCTCCGCCACAGGCTGGCGAGGTCCGAATCAAGATT
CTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTGGAGCGGCAAGGA
TCCTGAAGGTCTCTTCCCCTGTATCCTAGGTCATGAGGCTGCTGGGATTG
TGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGGC
ATCCCTTGTTACCAGGCAGAATGCCCAGATTGCAAGTTTTGCAAGTACTG
GAAAGACTAACCTCTAGGGGTAAGGTTAGNGGTGCCAC
back to top