CB610815

Overview
NameCB610815
Unique NameCB610815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:22..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.285e-35
Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 1
Query:  181 STGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            +T GQVI CKAAVAWE  K LV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVT++ PGDH +P +  EC DC  CK
Sbjct:    3 TTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTDLAPGDHVLPVFTGECKDCAHCK 107          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.285e-35
Identity = 69/106 (65.09%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            M+T G+VI C+AAV WE  K L IE+V+VAPPQA EVRIKIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEGVT+V PGDH +P +  EC +C  CK
Sbjct:    1 MATAGKVIKCRAAVTWEAGKPLSIEEVEVAPPQAMEVRIKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECAHCK 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.285e-35
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            M+T G+VI CKAAVAWE  K L +E+V+VAPPQA EVR+KILFT+LCHTD Y W  K    +FP I GHEA GIVESVGEGVT+V PGDH +P +  EC +C  CK
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLTMEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQIPMFPRIFGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECPHCK 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.192e-35
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            M+T G+VI CKAAVAWE  K L IE+V+VAPPQA EVR+KIL+T+LCHTD Y W  K    +FP I GHEA GI+ESVGEGVT+V PGDH +P +  EC +C  CK
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCK 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.863e-35
Identity = 69/99 (69.70%), Postives = 80/99 (80.81%), Query Frame = 1
Query:  196 VITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            VI CKAAVAWE  K L IE+++VAPP+A EVR+KI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+ +PGD  IP Y  +C +CKFC
Sbjct:    4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRVKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEGVTKFKPGDTVIPLYIPQCGECKFC 102          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 4.884e-35
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:  193 QVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            +VI CKAAVAWE  K L IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+++ GD  IP Y  +C +CKFC
Sbjct:    4 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFC 103          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.378e-35
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 1
Query:  190 GQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            G+ I C AA+AWE  K L IE+V+VAPP++GEVRIKIL + +CHTDAYT  G DPEG+FP ILGHE AGIVES+GEGVT V+PGD  IP Y  +C +CKFC
Sbjct:    5 GKPIKCMAAIAWEAKKPLSIEEVEVAPPKSGEVRIKILHSGVCHTDAYTLEGIDPEGIFPVILGHEGAGIVESIGEGVTSVKPGDTVIPLYVPQCYECKFC 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.378e-35
Identity = 70/100 (70.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:  193 QVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            QVI CKAAVAWE  K L IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG +P ILGHE AGIVESVGEGVT+++ GD  IP Y  +C +CKFC
Sbjct:    4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGNYPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFC 103          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.088e-34
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:  193 QVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            +VI CKAAVAWE  K + IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+++ GD  IP Y  +C +CKFC
Sbjct:    4 EVIKCKAAVAWEAGKPVSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFC 103          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.421e-34
Identity = 69/100 (69.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:  193 QVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            +VI CKAAVAWE  K L IE+++VAPP+A EVRIKI  TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT ++ GD  IP Y  +C +CKFC
Sbjct:    4 KVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIFATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVIPLYIPQCGECKFC 103          
The following BLAST results are available for this feature:
BLAST of CB610815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
ADH2_SOLLC1.285e-3565.71Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH2_MAIZE1.285e-3565.09Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADH1_HORVU1.285e-3564.15Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
ADH1_PENAM2.192e-3563.21Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADHX_UROHA2.863e-3569.70Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHX_HUMAN4.884e-3569.00Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHX_OCTVU6.378e-3566.34Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADHX_BOVIN6.378e-3570.00Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_HORSE1.088e-3469.00Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADHX_RABIT1.421e-3469.00Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_C02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610815 ID=CB610815; Name=CB610815; organism=Citrus sinensis; type=EST; length=538bp
GGGGGGTGTGTTTGGCAGATTCAATAATAGAGGGAGCTACTTTAGAGATC
NCTCACCTCTGTTGCCGGCAGCCACTCTCAGATCGTGTCACGTCCCTTTT
GAATAATAATATCTAACTGCATCTACTCGTTTCTTTTTGTGGTCTGTTTT
TCATTCTCATTTTCATTGTCAGCAGCCATGTCTACTGGAGGTCAAGTCAT
CACATGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGGCATTGGTGATTG
AGGATGTGCAGGTTGCTCCGCCACAGGCTGGCGAGGTCCGAATCAAGATT
CTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTGGAGCGGCAAGGA
TCCTGAAGGTCTCTTCCCCTGTATCCTAGGTCATGAGGCTGCTGGGATTG
TGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGGC
ATCCCTTGTTACCAGGCAGAATGCCCAGATTGCAAGTTTTGCAAGTACTG
GAAAGACTAACCTCTAGGGGTAAGGTTAGNGGTGCCAC
back to top