CB610815

Overview
NameCB610815
Unique NameCB610815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:22..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 8.349e-27
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            MST G+VI CKAAV WE  K   IE+V+VAPP+A EVRIK++   +C +D +  SG     L P ILGHEAAGIVESVGEGVT V+PGD  IP +  +C  C+ CK
Sbjct:    1 MSTAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICK 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 8.349e-27
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCKY 498
            MST G+VI CKAAV WE  K   IE+V+VAPP+A EVRIK++ T +C +D +  SG     L P I GHEAAGIVES+GEGVT V+PGD  IP +  +C  C+ CK+
Sbjct:    1 MSTAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKH 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.090e-26
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCKY 498
            MST G+VI C+AAV WE NK   IE+V+V PP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEGVT V+PGD  IP +  +C  C+ CK+
Sbjct:    1 MSTAGKVIKCRAAVLWEKNKPFSIEEVEVVPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKH 106          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.424e-26
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            MST G+VI CKAAV WE  K   IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD  IP    +C  C+ CK
Sbjct:    1 MSTAGKVIKCKAAVLWEVMKPFSIEDVEVAPPKAYEVRIKMVTVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVEPGDKVIPLALPQCGKCRICK 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.860e-26
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            M T G+VITCKAA+AW+ +  L IE+++V+PP+A EVRIK++ T +C TD    + K  + LFP +LGHE AGIVESVG GVT  +PGD  IP +  +C  CK C
Sbjct:    1 MGTQGKVITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPK-KKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLC 104          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.429e-26
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            MST G+VI CKAAV WE  K   IE+V+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD  IP    +C  C+ CK
Sbjct:    1 MSTAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAQEVRIKMVAVGICGTDDHVVSGTMVTPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLAVPQCGKCRICK 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.173e-26
Identity = 60/106 (56.60%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            MST G+VI CKAAV WE  K   IE+V+VAPP+A EVRIK++   +C +D +  SG     L P ILGHEAAGIVE VGEGVT V+PGD  IP +  +C  C+ CK
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEEVEVAPPKAHEVRIKMVAVGICRSDDHVVSGTLVTPL-PAILGHEAAGIVEGVGEGVTTVKPGDKVIPLFTPQCGKCRVCK 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.144e-26
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            MST G+VI CKAAV WE  K   IE+V+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD  IP    +C  C+ CK
Sbjct:    1 MSTAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICK 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.412e-26
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  178 MSTGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFC 492
            MST GQVI CKAA+ W+P     IE+V+VAPP+A EVRIK++ T LC T+      K  + L+P ILGHE AGIVES+GEGV+ V+PGD  I  +  +C +C  C
Sbjct:    1 MSTTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSC 105          
BLAST of CB610815 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 5.412e-26
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  184 TGGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHGIPCYQAECPDCKFCK 495
            T G+VI CKAA+AWE  K L IE ++VAPP+A EVRIKIL T +C +D +  SG     L P +LGHEAAG+VESVGEGVT V+PGD  IP +  +C  C  C+
Sbjct:    2 TAGKVIKCKAAIAWEIKKPLSIEQIEVAPPKAHEVRIKILATGICRSDDHVISGAFKMPL-PMVLGHEAAGVVESVGEGVTCVKPGDKVIPLFVPQCGKCSSCR 104          
The following BLAST results are available for this feature:
BLAST of CB610815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
ADH1G_HUMAN8.349e-2757.55Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1E_HORSE8.349e-2756.07Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH1_GEOKN1.090e-2655.14Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1A_MACMU1.424e-2659.43Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADH4_RAT1.860e-2653.33Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH1A_PONAB2.429e-2658.49Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADH1G_PAPHA3.173e-2656.60Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH1A_HUMAN4.144e-2658.49Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH6_PONAB5.412e-2653.33Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1A_UROHA5.412e-2656.73Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_C02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610815 ID=CB610815; Name=CB610815; organism=Citrus sinensis; type=EST; length=538bp
GGGGGGTGTGTTTGGCAGATTCAATAATAGAGGGAGCTACTTTAGAGATC
NCTCACCTCTGTTGCCGGCAGCCACTCTCAGATCGTGTCACGTCCCTTTT
GAATAATAATATCTAACTGCATCTACTCGTTTCTTTTTGTGGTCTGTTTT
TCATTCTCATTTTCATTGTCAGCAGCCATGTCTACTGGAGGTCAAGTCAT
CACATGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGGCATTGGTGATTG
AGGATGTGCAGGTTGCTCCGCCACAGGCTGGCGAGGTCCGAATCAAGATT
CTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTGGAGCGGCAAGGA
TCCTGAAGGTCTCTTCCCCTGTATCCTAGGTCATGAGGCTGCTGGGATTG
TGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGGC
ATCCCTTGTTACCAGGCAGAATGCCCAGATTGCAAGTTTTGCAAGTACTG
GAAAGACTAACCTCTAGGGGTAAGGTTAGNGGTGCCAC
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