CB610962

Overview
NameCB610962
Unique NameCB610962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.406e-32
Identity = 93/274 (33.94%), Postives = 126/274 (45.99%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNL---------------------EGLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST +    ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   L+ +                      G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.406e-32
Identity = 93/274 (33.94%), Postives = 126/274 (45.99%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNL---------------------EGLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST +    ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   L+ +                      G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.406e-32
Identity = 91/282 (32.27%), Postives = 130/282 (46.10%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTG-----------SNFEADAN----------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISA 864
            +++  A+  LP+  +D+  GGA  EHTL+ N      I+ R R+L +V  + L T +    ++ PII++P  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   P + L+ +     + + G           S +   A              D S+SWKDLEW+R     P++IKGIL  +DA  A+  G  GI+VSNHG RQLD   +T  A
Sbjct:    8 DYRAAAKRKLPRFLFDYIDGGAYAEHTLRANGSDLADISLRQRVLKNVDNVSLETRLFGESLAMPIILSPVGLSGMYARRGEVQVARAAANKRIPFCLSTVSVCSIEEVASQSDQAIWFQLYVLKDRGFMKNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPYAAPRRILQAMTKPDWALNVGLLGRPHDLGNISRYLGKATTLEDYVGWLANNFDPSISWKDLEWIREFWQGPMIIKGILDPQDARDALSFGADGIVVSNHGGRQLDGVLSTAKA 289          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.406e-32
Identity = 89/274 (32.48%), Postives = 126/274 (45.99%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  EHTL+ N      I  R RIL ++S + L T +   K++ P+++AP  L  +    GEV  ARAAA       LS                  ++QLYV K R    + ++RA+  G K LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SW+DL W+R     P++IKGIL  EDA +AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYGEHTLRRNTADLADIALRQRILKNMSDLSLETQLFGEKLAMPVVLAPVGLTGMYARRGEVQAARAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRSALERAQAAGVKTLVFTVDMPTPGARYRDAHSGMSGPNAAARRMLQAVTHPQWAWDVGLNGKPHDLGNVSAYRGKPTTLEDYIGWLAANFDPSISWQDLAWIREFWKGPMIIKGILDPEDAKEAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECOUT (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain UTI89 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.229e-31
Identity = 88/274 (32.12%), Postives = 127/274 (46.35%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECOK1 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O1:K1 / APEC GN=lldD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.229e-31
Identity = 88/274 (32.12%), Postives = 127/274 (46.35%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECO45 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.229e-31
Identity = 88/274 (32.12%), Postives = 127/274 (46.35%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 91/282 (32.27%), Postives = 129/282 (45.74%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP-------------PLKNLE-GLLSTKVSSDTGSNFEADANE----------TMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISA 864
            +++  A+  LP   + +  GG+ DE TLK N +    +  R R+L D++ + L T I   K++ PI +AP  L  +    GEV  A+AA        +S                  ++QLYV K R     +++RA+  G   LV T D P  G R  D+ + M  P             P   L+ GLL         S +  +  +            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T  A
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYDERTLKRNTDDLGDVALRQRVLRDMTDLSLETEIFGEKLAMPIALAPVGLTGMYARRGEVQAAKAAEKKGIPFTMSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMKNVLERAKAAGVTTLVFTVDMPVPGARYRDMHSGMSGPNAAMRRVFQAMRHPSWALDVGLLGKPHDLGNISTYRGEPTKLEDYIGWLGANFDPSISWKDLEWIRDFWDGPMVIKGILDEEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAKA 289          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ENTS8 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 89/274 (32.48%), Postives = 129/274 (47.08%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKM-------------ITPPLKNLE----------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TLK NVE   ++  R R+L ++S + L TT+ +  +S P+ + P  L  +    GEV  ARAA++      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M             +T P    +          G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYIDGGAYAEYTLKRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALGPVGLCGMYARRGEVQAARAASAKGIPFTLSTVSVCPIEEVAPVMNRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGTNAAMRRYWQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECO27 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 88/274 (32.12%), Postives = 126/274 (45.99%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL  NVE    +  R RIL ++S + L TT+ + K+S P+ + P  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLHRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
The following BLAST results are available for this feature:
BLAST of CB610962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_XANCP9.406e-3233.94L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC89.406e-3233.94L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_PSEU29.406e-3232.27L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ERWCT9.406e-3232.48L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_ECOUT1.229e-3132.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOK11.229e-3132.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO451.229e-3132.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_VIBPA1.604e-3132.27L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]
LLDD_ENTS81.604e-3132.48L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_ECO271.604e-3132.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_A09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610962 ID=CB610962; Name=CB610962; organism=Citrus sinensis; type=EST; length=865bp
GGGGATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTATTC
GAATCGGTTCCAAATGGCAGCTGAACCTGTTAATTTGGATGAGTTCCAAG
AATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTGGT
GGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCATAG
AATTACGTTTCGGTCAAGAATTCTTGTCGATGTCAGCAGAATTGATTTAT
CGACTACCATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTCCA
ACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGTAGCCACAGCCAG
AGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAGCA
GCTCCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATCAA
TTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGAGC
TGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAGAC
TTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCGCCGTTG
AAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATACAGGTTC
GAATTTTGAAGCTGATGCCAACGAGACCATGGATGCTTCTTTAAGTTGGA
AGGATTTAGAATGGCTAAGATCTATTACAAACTTACCAATTTTGATCAAG
GGGATACTTACTCGTGAAGATGCAATAAAAGCTGTGGAAGTAGGTGTTGC
TGGGATTATTGTCTCCAATCACGGAGCTCGACAGTTAGATTATAGTCCTG
CCACTATTTCTGCTC
back to top