CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.274e-34
Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKL-QDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSG-QETIKLAIRALLEVVES 668
            YD   T+FSP+G L+QVEYALEA+     A+G+   D I L  EKK T KL +   S  K+  + +++  A AGL ADA +LIN AR   Q +  T  + +  E + R +  L+Q YTQ GG+RPFG+S L  G+D   G   L+Q++PSG + +W+AN+ G NS S++  + +  K+     E   +A++ L + ++S
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGY-QLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDS 202          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 75/197 (38.07%), Postives = 116/197 (58.88%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQETIKLAIRALLEVV 662
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D + L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++ KE  G+ T+K A+   ++V+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVL 197          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 75/197 (38.07%), Postives = 116/197 (58.88%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQETIKLAIRALLEVV 662
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D + L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++ KE  G+ T+K A+   ++V+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVL 197          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 75/197 (38.07%), Postives = 116/197 (58.88%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQETIKLAIRALLEVV 662
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D + L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++ KE  G+ T+K A+   ++V+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVL 197          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 75/197 (38.07%), Postives = 116/197 (58.88%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQETIKLAIRALLEVV 662
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D + L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+++ KE  G+ T+K A+   ++V+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVL 197          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.698e-33
Identity = 85/211 (40.28%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   78 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRAR-IECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKET----SGQETIKLAIRALLEVVESGGKNIKVAV 695
            Y  ++T FSP G L Q+EYAL AV+ G  +VG+R  D + L  E   +V   D   V +I     HI    +G+  D R+L+ +AR I  +   +  E+  T++ +T  IA + Q+YTQSGGVRPFG S LI G+D   G P L+Q DPSG + AWKA A G+N  + + FLEK   E      G  T  L +R   + V     N++VAV
Sbjct:    5 YGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVGSVLTDDQPKVEQI---SKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTD-IAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVAV 210          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 82/212 (38.68%), Postives = 118/212 (55.66%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSG---QETIKLAIRALLEVVESGGKNIKVAV 695
            A YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  +I L   G+ ADAR L+ +AR +    R T    + V+ + ++IA   Q YTQ   +RP G+  +++G D   G P LY+ DP+G F   KA + G        FLEK  KE       ET++ AI AL  V++   K  ++ V
Sbjct:    7 AGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENG-PLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQEDFKATEIEV 217          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 74/197 (37.56%), Postives = 116/197 (58.88%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSV-RKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKETSGQETIKLAIRALLEVV 662
            RYD   T+FSP+G L+QVEYA+EA+      +G+   D + L  E+++  KL D      KI  L+  +A + AG+ +DA VL N  R+  Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DP+G +  WKA   G NS +    L+++ KE  G+ T+K A+   ++V+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVL 197          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 82/217 (37.79%), Postives = 127/217 (58.53%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFL-EKNCKETSGQETIKLAIRALLEVVES--GGKNIKVAVM 698
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL ADA+ LI++AR+E Q+H  T  + +TVE +T+ ++ L  ++ +         RPFG++ L  G D     P L+  DPSGTF    A A G  S   +  L E   K  + +E IK ++  L +V+E      NI++A +
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG--PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATV 220          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 82/217 (37.79%), Postives = 127/217 (58.53%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFL-EKNCKETSGQETIKLAIRALLEVVES--GGKNIKVAVM 698
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL ADA+ LI++AR+E Q+H  T  + +TVE +T+ ++ L  ++ +         RPFG++ L  G D     P L+  DPSGTF    A A G  S   +  L E   K  + +E IK ++  L +V+E      NI++A +
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG--PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATV 220          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA4_SCHPO9.274e-3439.20Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA4_HUMAN1.582e-3338.07Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN1.582e-3338.07Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA4_RAT2.066e-3338.07Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MOUSE2.066e-3338.07Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSA2_CAEEL2.698e-3340.28Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA6A_ARATH3.524e-3338.68Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA4_MACFA3.524e-3337.56Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA5_MOUSE4.603e-3337.79Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN4.603e-3337.79Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
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