CB610981

Overview
NameCB610981
Unique NameCB610981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK---ETSGQETIKLAIRALLEVV----ESGGKNIKVAVM 698
            +YD  +TV+SP G + Q+EYA+EAV++G+A VG++      L   K++  +L   R  +KI+ +DNHI ++ AGL ADAR+L N  R EC   R   + P+ V  +   I    Q  TQ  G RP+G+  LI G+D     P ++QT PS  +   +A + G  S S R +LE++     E +  E +K  +RAL E +    +   KN+ + ++
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHR--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG--PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 77/207 (37.20%), Postives = 118/207 (57.00%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK---NCKETSGQETIKLAIRALLEVVESGGKNIK 686
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R    + L    K+  +L   +  RKI  +D+HI +A AGL AD RVL    R E  +H  T E P+ V  +  ++A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + +LE+   + +E+S ++ IK AI A+ E ++  G+ +K
Sbjct:    5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ--RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLD--ESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQ--GETLK 205          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.613e-28
Identity = 68/177 (38.42%), Postives = 100/177 (56.50%), Query Frame = 3
Query:   69 MARY-DRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEK 596
            MAR+ D   T+FSP+G L+QVEYA+EA  +    VG+   + + L  E+     +  S  V +I  L+ +IA    G  AD  VL+N+ R+  Q ++    + +  E +   +  ++Q YTQ GG RPFG+S L +G+D   G   LYQ+DPSG +S WKA   GR S +  E L+K
Sbjct:    1 MARFFDSRTTIFSPEGRLYQVEYAMEAASQSGTCVGLLAKNGVLLATERSVDKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAYTQYGGKRPFGVSFLYMGWDCRFGF-QLYQSDPSGNYSGWKATCIGRKSGAAMEMLQK 176          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28
Identity = 72/212 (33.96%), Postives = 114/212 (53.77%), Query Frame = 3
Query:   72 ARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK---ETSGQETIKLAIRALLEVVESGGKNIKVAV 695
            A +DR IT+FSP+G L+QVEYA +A+ +G   +V VRG D   +  +KK   KL DS +V  +  +   I     G+ AD+R  + RAR E  + +      + V+ + + IA + Q YTQ+  +RP G   +++G D   G P +Y+ DP+G +  +KA A G        FLEK  K   + + ++T++ AI  L  V+    K  ++ V
Sbjct:    7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG-PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEV 217          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 75/215 (34.88%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK---ETSGQETIKLAIRALLEVV----ESGGKNIKVAVM 698
            +YD  +TV+SP G + Q+EYA+EAV++G+A VG++      L   K++  +L   +  +KI+ +DNHI ++ AGL ADAR+L N  R EC   R   + P+ V  +   I    Q  TQ  G RP+G+  LI G+D     P ++QT PS  +   +A + G  S S R +LE++     E +  E +K  +RAL E +    +   KN+ + ++
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG--PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 75/215 (34.88%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK---ETSGQETIKLAIRALLEVV----ESGGKNIKVAVM 698
            +YD  +TV+SP G + Q+EYA+EAV++G+A VG++      L   K++  +L   +  +KI+ +DNHI ++ AGL ADAR+L N  R EC   R   + P+ V  +   I    Q  TQ  G RP+G+  LI G+D     P ++QT PS  +   +A + G  S S R +LE++     E +  E +K  +RAL E +    +   KN+ + ++
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG--PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIV 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 75/215 (34.88%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK---ETSGQETIKLAIRALLEVV----ESGGKNIKVAVM 698
            +YD  +TV+SP G + Q+EYA+EAV++G+A VG++      L   K++  +L   +  +KI+ +DNHI ++ AGL ADAR+L N  R EC   R   + P+ V  +   I    Q  TQ  G RP+G+  LI G+D     P ++QT PS  +   +A + G  S S R +LE++     E +  E +K  +RAL E +    +   KN+ + ++
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG--PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 75/215 (34.88%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK---ETSGQETIKLAIRALLEVV----ESGGKNIKVAVM 698
            +YD  +TV+SP G + Q+EYA+EAV++G+A VG++      L   K++  +L   +  +KI+ +DNHI ++ AGL ADAR+L N  R EC   R   + P+ V  +   I    Q  TQ  G RP+G+  LI G+D     P ++QT PS  +   +A + G  S S R +LE++     E +  E +K  +RAL E +    +   KN+ + ++
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG--PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 75/215 (34.88%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCKE---TSGQETIKLAIRALLEVV----ESGGKNIKVAVM 698
            +YD  +TV+SP G + Q+EYA+EAV++G+A VG++      L   K++  +L   +  +KI+ +DNHI ++ AGL ADAR+L N  R EC   R   + P+ V  +   I    Q  TQ  G RP+G+  LI G+D     P ++QT PS  +   +A + G  S S R +LE++  E    +  E +K  +RAL E +    +   KN+ + ++
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ--KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG--PHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIV 215          
BLAST of CB610981 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 76/207 (36.71%), Postives = 117/207 (56.52%), Query Frame = 3
Query:   75 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIALGVEKKSTVKLQDSRSVRKIVSLDNHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNCK---ETSGQETIKLAIRALLEVVESGGKNIK 686
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R    + L    K+  +L   +  RKI  +D+HI +A AGL AD RVL    R E  +H  T E P+ V  +  ++A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + +LE+  +   ++S ++ IK AI A+ E ++  G+ +K
Sbjct:    5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ--RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLD--ESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQ--GETLK 205          
The following BLAST results are available for this feature:
BLAST of CB610981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA1_MACFA2.001e-2835.35Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1B_ARATH2.001e-2837.20Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA4L_DROME2.613e-2838.42Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSA6_MOUSE3.413e-2833.96Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA1_PONAB5.822e-2834.88Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_MOUSE5.822e-2834.88Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_HUMAN5.822e-2834.88Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN5.822e-2834.88Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA1_RAT7.604e-2834.88Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1A_ARATH9.931e-2836.71Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610981 ID=CB610981; Name=CB610981; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAGAAACTCGAATCAGAGAGACGCAGAAATCGATCGAGAAGAGGA
AAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATCACTGTATT
TTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGAGGCCGTAC
GCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCATCGCTCTT
GGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGATCAGTGAG
GAAGATTGTCAGCTTGGATAATCATATTGCATTGGCCTGTGCTGGACTTA
AAGCAGATGCTCGTGTACTGATAAACAGGGCTCGAATAGAATGTCAGAGC
CACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGTACATCACTCGTTA
CATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGTGGTGTGAGACCAT
TTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATACACTGGCGTGCCA
TCACTATATCAGACAGATCCTTCTGGGACATTTTCTGCTTGGAAAGCTAA
TGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTGGAGAAAAACT
GTAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGCAATTCGGGCATTA
CTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAAAAGTTGCTGTGATGAT
CN
back to top