CB610996

Overview
NameCB610996
Unique NameCB610996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 2
Query:   38 MAVYKIKLI-GPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+  + G  G E+  E  +++Y LDAAE AG+DLPYSCRAGACS+CAG + +G VDQSD SFLDD+Q++ G++LTC++YP SDC+I +H+EE +
Sbjct:   48 MATYKVTFLDGETGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            YK+ L  P G++   E   D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G++DQSD SFLDD+Q   G++LTC++Y TSDC I +H+EE L
Sbjct:    2 YKVTLKTPSGDQ-TIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 54/96 (56.25%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A YK+ L+ P G +   +  +D Y+LDAAEEAG+DLPYSCRAG+CS+C GK+ +G+VDQ D SFLDD+Q+EAG++LTC+++P  D  I++HKEE++
Sbjct:    1 ATYKVTLVTPSGTQ-TIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.321e-28
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            A++K+K + P GE    E  +D++ILDA EEAG+DLPYSCRAGACS+C GKL+ G VDQS+ SFLDD+QM  G++LTC++YP  D  I++H EE+L
Sbjct:    1 AIFKVKFLTPDGER-TIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.321e-28
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            YK  L  P GE    +  E   ILDAAEEAG DLP+SCRAGACS+C GK+VSGSVDQS+GSFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct:    2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.942e-28
Identity = 57/101 (56.44%), Postives = 78/101 (77.23%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEA----QEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ L+    EEH+ +A     +D ++LDAAEE G++LPYSCRAGACSTCAGK+  G +DQS+ +FLDD+Q+ AG++LTCI+YP SDC +  H+E+EL
Sbjct:    1 MATYKVTLLS---EEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.942e-28
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            YK  L  P GE    +  E   ILDAAEEAG DLP+SCRAGACS+C GK+VSGSVD+S+GSFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct:    2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            Y + L  P G E E E  E  Y+LD+AE+ G+DLPYSCRAGACSTCAG +  G+VDQSD SFLDD+Q+   ++LTC++YPTSDC I++H+EE+L
Sbjct:    4 YTVTLSTPGGVE-EIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 54/98 (55.10%), Postives = 78/98 (79.59%), Query Frame = 2
Query:   38 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK++L    +G +   E  +D+YILDAAEEAG+DLP+SCR+G+CS+C G L  G+VDQSD +FLDD+Q+ AG +LTC++YPTS+C I++H+E+ +
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAI 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 2
Query:   47 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            +K+ L  P G++  FE   D YILD AEE G++LPYSCRAG+CS+CAGK+++GS+DQSD +FLDD+Q   GY LTC++YPTSD  I++H E EL
Sbjct:    1 FKVTLDTPDGKK-SFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
The following BLAST results are available for this feature:
BLAST of CB610996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_PHYPA7.742e-2957.14Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER2_DUNSA7.742e-2961.70Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER1_PHYAM7.742e-2956.25Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_GLEJA1.321e-2858.33Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER1_EQUTE1.321e-2867.02Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_ODOSI2.942e-2856.44Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER1_EQUAR2.942e-2865.96Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_RHOPL3.253e-2759.57Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER2_NOSMU3.253e-2755.10Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_PERBI2.754e-2658.51Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610996 ID=CB610996; Name=CB610996; organism=Citrus sinensis; type=EST; length=646bp
GGGTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACA
AGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAG
GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCC
CTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATG
GAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGT
GATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAG
TTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGC
TGATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTG
TCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGC
ATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAATTTCTCAAAATAAG
ATAATTACCCCCGAGCAGGGCCTAAATCGATCGGCCCTCACAAGTTGAAC
CATGCGCCGATCGATTTAAAAATGCAATTGAAAGATCNTGGTTGCC
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