CB610997

Overview
NameCB610997
Unique NameCB610997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  154 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKND 387
            A  L+++DF A WC PCK+++P+L  L  ++ +V+  KV++D+  + AE++ V ++PT +L K+GK ++R+VG K  D
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKD 92          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.432e-14
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  115 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            + S  E  +K + AK  +VVD  A+WC PCK ++P + + A+      F ++DVDEL  VA E  + AMPTF+L K+G+ +  +VGA    L+  ++
Sbjct:   10 ITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIK 106          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            A  K +V+D    WC PCK+M+P   ELA+KL  V+FLK+D + E K +A+E  +  +PTF + K GK+++ + GAK + L  A+E
Sbjct:  101 AGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIE 186          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 33/86 (38.37%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            A  K +V+D    WC PCK+++P+  EL++K   V+FLK+D + + KS+A+E  ++ +PTF + K+ K+++ + GAK +DL  A++
Sbjct:   92 AGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAID 177          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  109 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            + VES+ +   + I+A K+ VVDF A WC PCK + P L +L+++     F+ V+ D+   +A++  V A+PT VL ++G+ L+RIVGA    L   + K+
Sbjct:   20 NAVESFGDYNTR-ISADKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKK--LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            A  KL+VVDFTA+WC PC+ + PI   L+K      V+FLKVDVD+   V+    ++ MPTF   K G+ ++   GA +  L+  +  H
Sbjct:   18 AGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 33/90 (36.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  148 IAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKNDLQLAVEKH 411
            + ++KL++VDF A WC PC+++SP++ ELA++ +  V  +K++ DE  S++ E+ + ++PT +L K+GK ++ ++GA  K+ L  A++K+
Sbjct:   17 VNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.817e-13
Identity = 32/88 (36.36%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  148 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            + AK L+VV F A W P C  M+ +++ELAK+LP V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   +L   V++H
Sbjct:   28 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRH 115          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  151 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVE 405
            A  K++V+D    WC PCK+++P   EL++K   ++FLK+D + + K +A+E  +  +PTF + K+ KV++ + GAK  DL  A+E
Sbjct:   95 AGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: GLRX5_SCHPO (Monothiol glutaredoxin-5 OS=Schizosaccharomyces pombe GN=grx5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  115 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            VE + E LQ G   +++I+++F A W  PCK M+ +  + AK     +FLK++ ++   +AE + V A+P FVL    KVL RI GA    L+ A++++
Sbjct:    8 VEQFQEILQNG--KEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEY 104          
The following BLAST results are available for this feature:
BLAST of CB610997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_CHLCV5.690e-1439.74Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIO_EMENI7.432e-1438.14Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TRXF_MESCR1.268e-1343.02Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
TRXF_PEA1.656e-1338.37Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRX2_SCHPO3.688e-1337.62Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_ICTPU3.688e-1340.45Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_CYACA4.817e-1336.67Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
GLRX3_HUMAN4.817e-1336.36Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
TRXF2_ARATH6.291e-1338.37Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
GLRX5_SCHPO6.291e-1336.36Monothiol glutaredoxin-5 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610997 ID=CB610997; Name=CB610997; organism=Citrus sinensis; type=EST; length=518bp
NCGGCCGGGGACCAAACACAGAACCGATTATAAAGAAATCAGAACAGAGA
AGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGA
TCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATT
GCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCC
ATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCG
CTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAG
GAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAA
AGTCCTGGAGAGGATTGTGGGAGCAAAAAAAAATGACCTGCAGCTGGCTG
TCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGA
TTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTG
GGGCTGCTTACTATAACA
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