CB611075

Overview
NameCB611075
Unique NameCB611075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYLC_NOSCE (Probable leucyl-tRNA synthetase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100842 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.441e-16
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  323 KFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIK 517
            K+F  FP+PYMNG LHLGH +S SK +F + Y  L+G NVL P  FHCTGMPI A A KL  E++
Sbjct:   32 KYFITFPYPYMNGKLHLGHLYSISKADFMSYYKELQGFNVLFPLAFHCTGMPIAALAKKLGEELE 96          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METTP (Leucyl-tRNA synthetase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=leuS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  230 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 505
            EIE+K    WEE  VF+AEP  R       +KFF   P+PY+NG LH GH  +F+  +  A YHR+ G NVL P  FH TG PI   ++ +A
Sbjct:   10 EIEAKWQRIWEEEGVFHAEPDSR-------KKFFLTIPYPYLNGNLHAGHTRTFTIGDAIARYHRMLGENVLFPMAFHATGTPIVGLSELIA 94          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METBF (Leucyl-tRNA synthetase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=leuS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.220e-15
Identity = 43/97 (44.33%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  230 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQ 520
            EIE K    W+ES +F AEP +R       EKFF   P+PY+NG LH GH  +F+  +  A + R+ G NVL P GFH TG PI   A+ +A    Q
Sbjct:    9 EIEKKWQKKWDESQIFQAEPDKR-------EKFFITIPYPYLNGNLHAGHTRTFTIGDVVARHKRMLGYNVLYPMGFHVTGTPIVGLAELIANRDPQ 98          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METMA (Leucyl-tRNA synthetase OS=Methanosarcina mazei GN=leuS PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.081e-15
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  230 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 505
            EIE+K    W ES +F AEP +R       EKFF   P+PY+NG LH GH  +F+  +  A + R+ G NVL P GFH TG PI   A+ +A
Sbjct:    9 EIENKWQKKWNESRIFQAEPDKR-------EKFFITIPYPYLNGNLHAGHTRTFTIGDVVARHKRMLGYNVLYPMGFHVTGTPIVGLAELIA 93          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_ARCFU (Leucyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=leuS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.635e-15
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 508
            IE K    WE+  +F ++P E+       EKFF   P+PY+NG LH GH  +F+  +  A Y R+KG NVL P GFH TG PI   A+ +A+
Sbjct:    7 IEEKWQKAWEKDRIFESDPNEK-------EKFFLTIPYPYLNGNLHAGHTRTFTIGDAFARYMRMKGYNVLFPLGFHVTGTPIIGLAELIAK 91          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METAC (Leucyl-tRNA synthetase OS=Methanosarcina acetivorans GN=leuS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  230 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 505
            EIE K    W ES +F A+P +R       EKFF   P+PY+NG LH GH  +F+  +  A + R+ G NVL P GFH TG PI   A+ +A
Sbjct:    9 EIEEKWQKKWNESLIFQADPDKR-------EKFFITIPYPYLNGNLHAGHTRTFTIGDVVARHKRMLGYNVLYPMGFHVTGTPIVGLAELIA 93          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_AERPE (Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  218 DRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASA 493
            +RL  +E K    W E+ +F A+P           KFF  FP+PY+N Y HLG AF+  +++  A Y R++G NVL P G+H TG PI +SA
Sbjct:    2 ERLKAVEEKWQERWREARLFEADP------QPGRRKFFITFPYPYVNAYPHLGSAFTILRVDIMARYKRMRGYNVLFPQGWHATGGPIVSSA 87          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METJA (Leucyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=leuS PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.125e-14
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  230 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASAD 496
            EIE K    WEE+ +F A P +R       EKFF    FPY+NG LH GH  +F+  E  A + R+K  NVL  FG+H TG PI   A+
Sbjct:    9 EIEKKWQKRWEEAKIFEANPDDR-------EKFFITAAFPYLNGVLHAGHLRTFTIPEVVARFQRMKNKNVLWTFGYHVTGTPILGLAE 90          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METBU (Leucyl-tRNA synthetase OS=Methanococcoides burtonii (strain DSM 6242) GN=leuS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASAD 496
            IE K    W ES VF AE  +R       +K+F   P+PY+NG LH GH  +F+  +  A Y R+ G NVL P GFH TG PI   A+
Sbjct:   10 IEQKWQQKWNESKVFEAEADDR-------DKYFITIPYPYLNGNLHAGHTRTFTIGDVVARYKRMMGNNVLYPMGFHVTGTPIVGLAE 90          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL2_SULTO (Leucyl-tRNA synthetase 2 OS=Sulfolobus tokodaii GN=leuS2 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  224 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQ 520
            +  I  K    WE++ +F A P +R  N     KFF    FPY N   HLGH  ++   +  A Y R+KG NVL P GFH TG PI A AD +A+  K+
Sbjct:    1 MTSIAEKWQKEWEKAKIFEANP-DRTRN-----KFFTTVAFPYPNSPFHLGHGRTYVTCDIYARYMRMKGYNVLFPMGFHYTGTPIIAMADDVAKGDKE 93          
The following BLAST results are available for this feature:
BLAST of CB611075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SYLC_NOSCE1.441e-1658.46Probable leucyl-tRNA synthetase, cytoplasmic OS=No... [more]
SYL_METTP7.151e-1645.65Leucyl-tRNA synthetase OS=Methanosaeta thermophila... [more]
SYL_METBF1.220e-1544.33Leucyl-tRNA synthetase OS=Methanosarcina barkeri (... [more]
SYL_METMA2.081e-1545.65Leucyl-tRNA synthetase OS=Methanosarcina mazei GN=... [more]
SYL_ARCFU4.635e-1543.48Leucyl-tRNA synthetase OS=Archaeoglobus fulgidus G... [more]
SYL_METAC1.349e-1444.57Leucyl-tRNA synthetase OS=Methanosarcina acetivora... [more]
SYL_AERPE1.349e-1442.39Leucyl-tRNA synthetase OS=Aeropyrum pernix GN=leuS... [more]
SYL_METJA5.125e-1444.94Leucyl-tRNA synthetase OS=Methanocaldococcus janna... [more]
SYL_METBU1.491e-1344.32Leucyl-tRNA synthetase OS=Methanococcoides burtoni... [more]
SYL2_SULTO5.666e-1341.41Leucyl-tRNA synthetase 2 OS=Sulfolobus tokodaii GN... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611075 ID=CB611075; Name=CB611075; organism=Citrus sinensis; type=EST; length=631bp
GCGGGGGTTGATTGGAACCCGTAAACACAAACCAGATAACAGCATCTCAA
GATTCCCAAACCCTAGTATAAAAAGCTCTCTTTCGCTGGCTTTATCTCTA
CTGAGACAAAACGCCCCGTTTTTGCACCGCAATGCCCTTCGGTTTTCGGC
CCTGAATCACAGTTTTTCTCAGTTCCACGATATGGCAACAGAAAGTGGGA
AAAGCTTTGCGAGGAGAGATCGTCTCCTGGAGATTGAGTCAAAGGTCCAC
ACTTGGTGGGAGGAGAGTAATGTTTTCAATGCTGAACCTGGCGAAAGGCC
TCCGAATCCTGAAAGTGGGGAAAAGTTCTTTGGAAACTTTCCATTTCCTT
ATATGAATGGCTATTTGCATCTAGGGCATGCATTCTCATTTTCCAAGCTT
GAATTTGCTGCGGCGTATCATAGATTGAAAGGTGCTAATGTGCTTTTGCC
ATTTGGTTTCCACTGCACTGGTATGCCCATTAAGGCCTCAGCTGATAAGC
TTGCTAGGGAAATTAAGCAGTTTGGGAATCCACCTGTATTTCTCAAAGAA
GCGGAGGAGGAAGAAAGTCCACAGCCAGAAGAAGCTGAGGATGCAAATGG
AGGTGCTCCACCGGATAAGTTTAAGAGCAAG
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