CB611075

Overview
NameCB611075
Unique NameCB611075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METVS (Leucyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=leuS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-13
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  224 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            L++I  K    W+ES +F  +   R       EKFF +  FPY+NG LH GH  +F+  E  A Y R+K  NVL  FGFH TG PI   A+++
Sbjct:   14 LIQIMDKWQRKWDESKIFETKHDNR-------EKFFISAAFPYLNGVLHAGHLRTFTIPETIARYQRMKNKNVLWTFGFHVTGTPILGLANQI 99          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_NANEQ (Leucyl-tRNA synthetase OS=Nanoarchaeum equitans GN=leuS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  320 EKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLA 505
            +KFF    FPY+NGYLHLGH  ++ K E  A Y +++G +VL P GFH TG PI A+A K++
Sbjct:    2 KKFFVTAAFPYVNGYLHLGHLVTYIKAEITARYKKMRGYDVLFPMGFHATGAPIYAAAYKVS 63          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METMP (Leucyl-tRNA synthetase OS=Methanococcus maripaludis GN=leuS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  224 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            L++I  K    W E+ +F AE   R       +KFF    FPY+NG LH GH  +F+  E  A Y R+K  NVL  FGFH TG PI   A+++
Sbjct:   17 LIKIMDKWQKKWTEAKIFEAEHDSR-------DKFFITAAFPYLNGVLHAGHLRTFTIPETIARYQRMKNKNVLWTFGFHVTGTPILGLANQI 102          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_STAMF (Leucyl-tRNA synthetase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=leuS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  224 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 508
            L  +E+K  + W E  +F  EP   P  P    K+F   P+PY N  LH+GH  +++  +  A Y RL+G NVL P  FH TG PI A +++++R
Sbjct:   10 LRSVEAKWQSKWMEKKIF--EPRIEPDKP----KYFITVPYPYTNAPLHIGHGRTYTIGDIIARYKRLRGYNVLFPMAFHITGTPIIAISERISR 98          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL2_METS5 (Leucyl-tRNA synthetase 2 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=leuS2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  218 DRLLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 508
            D L EI  K    W ++ +F A+P ++       +KFF    FPY N   HLGH  ++   +  A + R+KG NVL P GFH TG PI   AD +A+
Sbjct:   11 DLLNEISKKWQEEWSKNRIFEADPKDQ-------KKFFTTVAFPYPNSPFHLGHGRTYVTGDVYARFMRMKGYNVLFPMGFHFTGTPIITMADDVAK 100          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METM7 (Leucyl-tRNA synthetase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=leuS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  224 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            L++I  K    W E+ +F AE   R       +KFF    FPY+NG LH GH  +F+  E  A Y R+K  NVL  FGFH TG PI   A+++
Sbjct:   17 LIQIMDKWQKKWTEAKIFEAEHDLR-------DKFFITAAFPYLNGVLHAGHLRTFTIPETIARYQRMKNKNVLWTFGFHVTGTPILGLANQI 102          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL_METM5 (Leucyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=leuS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  224 LLEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKL 502
            L++I  K    W E+ +F AE   R       +KFF    FPY+NG LH GH  +F+  E  A Y R+K  NVL  FGFH TG PI   A+++
Sbjct:   17 LIQIMDKWQKKWTEAKIFEAEHDLR-------DKFFITAAFPYLNGVLHAGHLRTFTIPETIARYQRMKNKNVLWTFGFHVTGTPILGLANQI 102          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL2_SULSO (Leucyl-tRNA synthetase 2 OS=Sulfolobus solfataricus GN=leuS2 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 37/96 (38.54%), Postives = 49/96 (51.04%), Query Frame = 2
Query:  233 IESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQ 520
            I  K  T WEE  ++ + P    P      KFF    FPY N   H+GH  ++   +  A Y R++G NVL P  FH TG PI A AD +A+  K+
Sbjct:    4 IAYKWQTRWEEDKIYESNPNPSKP------KFFTTVAFPYPNSPWHIGHGRTYVTGDILARYKRMRGYNVLFPMAFHYTGTPIMAMADAIAKGDKE 93          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL2_SULAC (Leucyl-tRNA synthetase 2 OS=Sulfolobus acidocaldarius GN=leuS2 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 2
Query:  227 LEIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAREIKQ 520
            ++I  K    WE   VF+A P    PN +   KFF    FPY N   HLGH  ++   +  A Y R++G NVL P  FH TG PI A AD +A+  K+
Sbjct:    1 MKISEKWQKEWENKRVFDATPD---PNKK---KFFTTIAFPYPNSPFHLGHGRTYVTGDIYARYMRMRGYNVLFPMAFHYTGTPIIAMADDVAKGDKE 92          
BLAST of CB611075 vs. ExPASy Swiss-Prot
Match: SYL1_METS5 (Leucyl-tRNA synthetase 1 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=leuS1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 35/93 (37.63%), Postives = 48/93 (51.61%), Query Frame = 2
Query:  230 EIESKVHTWWEESNVFNAEPGERPPNPESGEKFFGNFPFPYMNGYLHLGHAFSFSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLAR 508
            E+  K    WE + VF A       NP + EK+F    FPY N  LH+GH  ++   +  A Y R+ G NVL PF F  TG PI + ++ + R
Sbjct:    8 EVAKKWQEKWENNKVFEA-------NPSNSEKYFITVAFPYTNSPLHIGHGRTYITADIVARYQRMIGKNVLFPFAFQFTGTPILSISESIKR 93          
The following BLAST results are available for this feature:
BLAST of CB611075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SYL_METVS7.401e-1341.94Leucyl-tRNA synthetase OS=Methanococcus vannielii ... [more]
SYL_NANEQ1.262e-1251.61Leucyl-tRNA synthetase OS=Nanoarchaeum equitans GN... [more]
SYL_METMP1.649e-1241.94Leucyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYL_STAMF2.153e-1238.95Leucyl-tRNA synthetase OS=Staphylothermus marinus ... [more]
SYL2_METS52.153e-1239.18Leucyl-tRNA synthetase 2 OS=Metallosphaera sedula ... [more]
SYL_METM72.812e-1241.94Leucyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYL_METM52.812e-1241.94Leucyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYL2_SULSO2.812e-1238.54Leucyl-tRNA synthetase 2 OS=Sulfolobus solfataricu... [more]
SYL2_SULAC3.673e-1240.82Leucyl-tRNA synthetase 2 OS=Sulfolobus acidocaldar... [more]
SYL1_METS58.182e-1237.63Leucyl-tRNA synthetase 1 OS=Metallosphaera sedula ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611075 ID=CB611075; Name=CB611075; organism=Citrus sinensis; type=EST; length=631bp
GCGGGGGTTGATTGGAACCCGTAAACACAAACCAGATAACAGCATCTCAA
GATTCCCAAACCCTAGTATAAAAAGCTCTCTTTCGCTGGCTTTATCTCTA
CTGAGACAAAACGCCCCGTTTTTGCACCGCAATGCCCTTCGGTTTTCGGC
CCTGAATCACAGTTTTTCTCAGTTCCACGATATGGCAACAGAAAGTGGGA
AAAGCTTTGCGAGGAGAGATCGTCTCCTGGAGATTGAGTCAAAGGTCCAC
ACTTGGTGGGAGGAGAGTAATGTTTTCAATGCTGAACCTGGCGAAAGGCC
TCCGAATCCTGAAAGTGGGGAAAAGTTCTTTGGAAACTTTCCATTTCCTT
ATATGAATGGCTATTTGCATCTAGGGCATGCATTCTCATTTTCCAAGCTT
GAATTTGCTGCGGCGTATCATAGATTGAAAGGTGCTAATGTGCTTTTGCC
ATTTGGTTTCCACTGCACTGGTATGCCCATTAAGGCCTCAGCTGATAAGC
TTGCTAGGGAAATTAAGCAGTTTGGGAATCCACCTGTATTTCTCAAAGAA
GCGGAGGAGGAAGAAAGTCCACAGCCAGAAGAAGCTGAGGATGCAAATGG
AGGTGCTCCACCGGATAAGTTTAAGAGCAAG
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