CB611092

Overview
NameCB611092
Unique NameCB611092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.084e-34
Identity = 67/116 (57.76%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  130 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC---VNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            G GW+ AHATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFE++C         C PGS+ VTATNFC          GGWCNPP+ HFD+SQPVF++I+
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIA 176          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.177e-34
Identity = 69/119 (57.98%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  127 YGQG-WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDP--RWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            YG G W  AHATFY              YGNLYS+GYG N AALSTALFN+G SCGACFEIKCVN P   WC PG  SI +TATNFC          GGWCNPP+ HFDL+ P+F  I+
Sbjct:   31 YGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIA 149          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.565e-33
Identity = 62/111 (55.86%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  136 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            GW   HATFY              YGNL+S+GYG  TAALSTALFN+G  CGACFE++C +DP WC PGSI V+ATNFC          GGWCNPP +HFDL++P F QI+
Sbjct:   31 GWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIA 141          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.555e-33
Identity = 62/113 (54.87%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  127 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQI 465
            YG  W  AHATFY              YGNLYS GYGTNTAALST LFN+G +CG+C+E++C ND +WC PGS+ VTATN C          GGWCNPP+ HFD+++P F QI
Sbjct:   26 YGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQI 137          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.856e-32
Identity = 63/114 (55.26%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  127 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            YG GW  AHATFY              YGNLYS+GYGTNTAALSTALFN+G +CG+C+E++C N    C PGSI VTATNFC          GGWCNPP+ HFD+++P F  I+
Sbjct:   21 YG-GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIA 133          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.856e-32
Identity = 63/114 (55.26%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  127 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            YG GW  AHATFY              YGNLYS+GYGTNTAALSTALFN+G +CG+C+E++C N    C PGSI VTATNFC          GGWCNPP+ HFD+++P F  I+
Sbjct:   21 YG-GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIA 133          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.264e-31
Identity = 64/111 (57.66%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            W +AHATFY              YGNLYS+GYG  TAALSTALF+ G+SCGACFE+ CVNDP+WC  G SI VTATNFC          GG C+PP  HFDLSQP++E+I+
Sbjct:   38 WINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFC--------PPGGACDPPNHHFDLSQPIYEKIA 140          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.272e-31
Identity = 60/110 (54.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            W DA ATFY              YG+L+ +GYG  TAALSTALFN G +CGAC++I CVNDP+WC PGS+ +TATNFC          G WCNPPQ+HFDLS P+F +I+
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIA 155          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.713e-30
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            W DA ATFY              YG+L+ +GYG  TAALSTALFN G +CGAC++I CV+DP+WC PG+I +TATNFC          G WCNPPQ+HFDLS P+F +I+
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIA 162          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.713e-30
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  136 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQI 465
            GW  AHATFY              YGNLY++GYGT TAALSTALFN+G++CG C+++ C    D  WC+PG S+ +TATNFC          GGWCNPP+ HFD++QP +E+I
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKI 145          
The following BLAST results are available for this feature:
BLAST of CB611092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA5_ORYSJ1.084e-3457.76Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ORYSJ9.177e-3457.98Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ARATH1.565e-3355.86Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA2_ORYSJ4.555e-3354.87Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ3.856e-3255.26Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI3.856e-3255.26Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA5_ARATH3.264e-3157.66Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP23_ARATH7.272e-3154.55Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP25_ARATH4.713e-3053.64Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP13_ORYSJ4.713e-3051.33Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_C08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611092 ID=CB611092; Name=CB611092; organism=Citrus sinensis; type=EST; length=478bp
GGGGATCACTCACAGCAAGAACCTGATTTTCTCTCTTACAAAAAGATACG
CAAGCAAAAGGGTTTCAGGAACATGGCATTTCTTGGGCTGCTGTTGTTGG
GGATTCTTTCTTTAGTCTCATCTGTTTATGGCCAGGGATGGACTGATGCT
CATGCCACTTTTTATGGTGGGGGTGATGCCTCTGGTACAATGGGTGGCGC
TTGTGGGTATGGAAACTTATACAGCGAGGGATATGGGACAAACACAGCAG
CTCTGAGCACTGCACTTTTCAACAATGGCATGAGCTGTGGGGCTTGTTTT
GAGATCAAGTGTGTTAATGACCCAAGATGGTGCCGTCCGGGCTCCATTTT
TGTTACTGCCACAAATTTTTGCCCTCCAAATAATGCTCTCCCAAACAATG
CCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCCT
GTGTTTGAACAAATTAGCTCAGTACAAA
back to top