CB611092

Overview
NameCB611092
Unique NameCB611092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.791e-29
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            WT A ATFY              YG+LY  GYGT TAALSTALFN G SCGACF I C     +WC+PG SI VTATNFC          GGWCNPP++HFD+SQP +E I+
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIA 136          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.791e-29
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQI 465
            W  AHATFY              YGNLYS+GYGT  AALSTALFN+G SCG C++I C     P+WC+PG ++ +TATNFC          GGWCNPP+ HFD++QP +E+I
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKI 150          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.055e-29
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVND-PRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            W   HATFY              YGNLYS+GYGT+TAALSTALFN G+SCG+C+E++C  D  R C PG  ++ VTATNFC          GGWCNPP++HFDL++P F +I+
Sbjct:   28 WQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIA 140          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.055e-29
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  136 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            GW    ATFY              YG+L+ +GYG  TAALSTALFNNG  CGAC+EI C + P+WC PGSI +TATNFC            WCNPPQ+HFDLSQP+F +I+
Sbjct:   89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFC--PPDFTKPNDNWCNPPQKHFDLSQPMFLKIA 197          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.055e-29
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQI 465
            W  AHATFY              YG+LYS+GYGT  AALSTALFN+G SCG C++I C     P+WCRPG ++ +TATNFC          GGWCNPP+ HFD++QP +E+I
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKI 163          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.990e-29
Identity = 60/114 (52.63%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  136 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            GW  AHATFY              YGNLY++GY TNTAALSTALFN+G SCG C++I C     P+WC  G SI +TATNFC          GGWCNPP+ HFD++QP F  I+
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIA 140          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.806e-29
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  136 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQI 465
            GW+   ATFY              YGNLY++GYGT TAALSTALF++G SCG C+ + C    DPRWCR G S+ VTATNFC          GGWCNPP+ HFD++QP +E+I
Sbjct:   33 GWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERI 145          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.806e-29
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            W DA ATFY              YGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFC            WCNPPQ+HFDLS  +F +I+
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIA 165          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.806e-29
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIS 468
            W DA ATFY              YGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFC            WCNPPQ+HFDLS  +F +I+
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIA 159          
BLAST of CB611092 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.806e-29
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  139 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQI 465
            W  AHATFY              YG+LYS+GYGT  AALSTALFN+G SCG C++I C     P+WC+PG ++ +TATNFC          GGWCNPP+ HFD++QP +E+I
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKI 145          
The following BLAST results are available for this feature:
BLAST of CB611092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA8_ORYSJ1.791e-2955.36Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ORYSJ1.791e-2951.79Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ORYSJ3.055e-2952.21Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP24_ARATH3.055e-2953.15Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP22_ORYSJ3.055e-2951.79Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH3.990e-2952.63Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP29_ORYSJ6.806e-2952.21Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH6.806e-2952.73Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH6.806e-2952.73Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP14_ORYSJ6.806e-2950.89Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_C08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611092 ID=CB611092; Name=CB611092; organism=Citrus sinensis; type=EST; length=478bp
GGGGATCACTCACAGCAAGAACCTGATTTTCTCTCTTACAAAAAGATACG
CAAGCAAAAGGGTTTCAGGAACATGGCATTTCTTGGGCTGCTGTTGTTGG
GGATTCTTTCTTTAGTCTCATCTGTTTATGGCCAGGGATGGACTGATGCT
CATGCCACTTTTTATGGTGGGGGTGATGCCTCTGGTACAATGGGTGGCGC
TTGTGGGTATGGAAACTTATACAGCGAGGGATATGGGACAAACACAGCAG
CTCTGAGCACTGCACTTTTCAACAATGGCATGAGCTGTGGGGCTTGTTTT
GAGATCAAGTGTGTTAATGACCCAAGATGGTGCCGTCCGGGCTCCATTTT
TGTTACTGCCACAAATTTTTGCCCTCCAAATAATGCTCTCCCAAACAATG
CCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCCT
GTGTTTGAACAAATTAGCTCAGTACAAA
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