CB611111

Overview
NameCB611111
Unique NameCB611111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.052e-23
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  180 VEKENVSAGDS-AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 596
            V  E V  G S  +C     A+V     L      E  +  + +   ++P   GE +I C+++ T+P+V+  +G K++ LS E Y LK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G A+A
Sbjct:  270 VHMEQVDVGSSLTLCKGGCEAIVDTGTSLIVGPVDE--VRELQKAIGAVPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  318 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 599
            ++P   GE +I C+++ ++P ++F +G + + L PE+YILK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA+AA
Sbjct:  312 AVPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  318 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 599
            ++P   GE +I C+++ ++P V+  +G K + LSPE Y LK  +    VC+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G AEAA
Sbjct:  295 AVPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.796e-23
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  318 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 596
            ++P   GE +I C+++ ++P V   +G K + L P++YILK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA A
Sbjct:  315 AVPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.530e-21
Identity = 60/186 (32.26%), Postives = 95/186 (51.08%), Query Frame = 3
Query:   39 CKLVVSHY-GDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA-EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 590
            C+   +HY G++ W+ LVS    +    ++     +G  Y S  I ++V+      G S +    +                  V+  I      +P   GE  ++C +IP++PN++F +G + F+L  + YIL+   G     C+SGFM  D+P P GPLWILGDVF+G +++VFD G  R+GFA
Sbjct:  233 CETDPNHYVGNIAWEPLVS---EDYWRIKLASVVIDGTTYTSGPIDSIVD-----TGTSLLTGPTD------------------VIKKIQHKIGGIPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.054e-19
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  180 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 593
            ++  +V+ G +     CE A+V     L    TKE  +  +     + P   G+ +I CD+I ++P V+  +G K + L+ EQY+ K       +C+SGF   D+PPP GPLWILGDVF+G Y+TVFD     +GFA+
Sbjct:  262 MDSVDVANGLTLCKGGCE-AIVDTGTSLITGPTKE--VKELQTAIGAKPLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.797e-19
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  180 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL----RIGFAEA 596
            +E+  V  G +     C  A++     L    T+E  +  ++     +P   GE II C  IP +P VSF +G   FNL+   Y+++T      +C+SGF A D+PPP GP WILGDVF+G Y  VFD G +    R+G A A
Sbjct:  262 MERVKVGPGLTLCAKGCA-AILDTGTSLITGPTEE--IRALHAAIGGIPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.347e-19
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  282 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 590
            E++ +YI      + N  GE  + C  +  MP+V+FTI    ++L+PEQY+L+ G G    C SGF   D+ PP GPLWILGDVF+G Y++VFD G  R+GFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGGY---CSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 3
Query:  336 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 590
            G+  +DC  +  MP V+FTI    + ++P+QY L+ G G   VC SGF   D+PPP GPLWILGDVF+G Y++VFD G  R+G A
Sbjct:  304 GDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGG---VCSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of CB611111 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.551e-18
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  180 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIG 584
            +E   V  G S     C  A++     L    ++E  +  +N+     P   G+  I C + PT+P VSF +G   FNL+ + Y++K  +    +C+ GF A D+P P GPLWILGDVF+G Y  VFD G   +G
Sbjct:  257 MESVKVGTGLSLCAQGCS-AILDTGTSLITGPSEE--IRALNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
The following BLAST results are available for this feature:
BLAST of CB611111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CATD_CANFA2.052e-2340.00Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATD_RAT5.969e-2348.94Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_BOVIN5.969e-2351.06Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_MOUSE7.796e-2349.46Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
ASP3_CAEEL9.530e-2132.26Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
CATD_CHICK1.054e-1937.68Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
NAPSA_HUMAN1.797e-1937.76Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RANCA2.347e-1946.60Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATEA_XENLA1.521e-1850.59Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
NAPSA_MOUSE7.551e-1836.30Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611111 ID=CB611111; Name=CB611111; organism=Citrus sinensis; type=EST; length=855bp
GGGATGCCATTGGTGGCGATGGAGTTGTTAGTGCAGAGTGTAAGCTAGTT
GTTTCCCACTACGGGGATTTAATATGGGATCTTTTAGTATCAGGGCTACT
ACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATGGCGCTG
AATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAACGTATCA
GCCGGGGATAGTGCAGTGTGCAGTGCTTGTGAAATGGCCGTGGTTTGGGT
CCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCAGTTATA
TAAATGAGCTCTGCGACAGCCTGCCAAATCCGATGGGCGAATCAATTATT
GACTGTGATCGCATTCCAACCATGCCAAATGTTTCATTCACCATCGGAGA
CAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCGGAGAAG
GGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTGCCTCCT
CCAAGGGGTCCTCTGTGGATTCTGGGAGATGTATTCATGGGGGTTTATCA
CACTGTTTTCGACTCTGGTAAGCTCCGGATCGGCTTTGCTGAGGCTGCGT
AATGATCTACTTACTGTCAAGTTTTTATGTAGTAGCAGCGATCATCACCT
GCTCATATGAGGAGGAGGGTTCTAGAATGTAGATTATGGTTTTCATGTAC
TGTAAAACGATCAGTATGCTTTTATGCATAACTATCTTCATCATCACCAC
AGATGATATGCTGATATATACTTATGTAAAATCCTATCATCCTATGTTTA
AAGTGATTTAATTTTATGATATTCTGACGGATAAAAGATAAAAAAAAAAA
AAAAA
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