CB611121

Overview
NameCB611121
Unique NameCB611121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKG  + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKG  + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKG  + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_ECO57 (NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKG  + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_YARLI (Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia lipolytica GN=ISU1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 59/96 (61.46%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR--TKPSAASEAELPPRAA 285
            ++ G I D  FKTFGCGSAIASSS  TE V+G  + E   IKNT IAK LSLPPVKLHCSMLAEDAIK+A+ DY +KR    P+  +EA   P AA
Sbjct:   82 DDNGVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSKRKTKNPTLGAEAAETPAAA 177          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_ASHGO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya gossypii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            D+ TG I +  FKTFGCGSAIASSS  TE V+G  + +   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY +KR
Sbjct:   70 DDSTGVIENVKFKTFGCGSAIASSSYMTELVRGKTLADAEKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYRSKR 148          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + G I DACFKT+GCGSAIASSS+ TEW+KG  + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   49 KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNK 124          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_HAEIN (NifU-like protein OS=Haemophilus influenzae GN=nifU PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.882e-24
Identity = 51/78 (65.38%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++ G I DA FKT+GCGSAIASSS+ TEWVKG  ++E  +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY+AK+
Sbjct:   48 DDNGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQ 125          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_TRAHO (Iron sulfur cluster assembly protein 1 OS=Trachipleistophora hominis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.683e-24
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            E   I DA F+TFGCGSAIASSS+ATEW+KG  + + L I N +IAK LSLPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   60 ENDIIKDAKFRTFGCGSAIASSSLATEWIKGKSISDSLKITNKDIAKKLSLPPVKLHCSMLAEDAIKAAISDYQKK 135          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_SCHPO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Schizosaccharomyces pombe GN=isu1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 246
            G I D  FKTFGCGSAIASSS  T  VKG  ++E   IKNT+IAK L LPPVKLHCSMLAEDAIK+AVK Y +K+  P
Sbjct:  102 GVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLTP 179          
The following BLAST results are available for this feature:
BLAST of CB611121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NIFU_SHIFL2.022e-2467.53NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI2.022e-2467.53NifU-like protein OS=Escherichia coli (strain K12)... [more]
NIFU_ECOL62.022e-2467.53NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]
NIFU_ECO572.022e-2467.53NifU-like protein OS=Escherichia coli O157:H7 GN=n... [more]
ISU1_YARLI2.022e-2461.46Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_ASHGO2.022e-2469.62Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCBP4.504e-2467.11NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
NIFU_HAEIN5.882e-2465.38NifU-like protein OS=Haemophilus influenzae GN=nif... [more]
ISU1_TRAHO7.683e-2469.74Iron sulfur cluster assembly protein 1 OS=Trachipl... [more]
ISU1_SCHPO1.109e-2267.95Iron sulfur cluster assembly protein 1, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_G02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611121 ID=CB611121; Name=CB611121; organism=Citrus sinensis; type=EST; length=391bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTTGGCTG
TGGCTCGGCCATCGCTTCTTCTTCTGTTGCAACGGAATGGGTGAAAGGGA
NNCAGATGCAGGAAGTCTTGTCCATTAAAAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAACCAAGTG
CTGCTTCAGAGGCAGAACTACCTCCAAGGGCTGCTGATGTTTGAAGATAT
TGATGTAAACATTTGAAAATGATGTTAATGTTCTGCCTGTGGAGATGTAT
CAGGATAACTGCACCTCCTAAAGATTGATGTCGGGTGGTGG
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