CB611121

Overview
NameCB611121
Unique NameCB611121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: ISU1_ENCCU (Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi GN=ISU1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPS 249
            I DA FKTFGCGSAIASSS+ATEW+K   + E L I N +IAK LSLPP+KLHCSMLAEDAIK A+KD+   + KPS
Sbjct:   64 IEDAKFKTFGCGSAIASSSLATEWIKKKTIDESLKISNRDIAKKLSLPPIKLHCSMLAEDAIKMAIKDF-LDKNKPS 139          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_AZOVI (Nitrogen fixation protein nifU OS=Azotobacter vinelandii GN=nifU PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.965e-17
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D ET  I+DA F+TFGCGSAIASSS  TE VKG  + E L I N +IA +L  LPP K+HCS++  +A++AAV +Y  +
Sbjct:   46 DPETDVILDAGFQTFGCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGE 124          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_AZOCH (Nitrogen fixation protein nifU OS=Azotobacter chroococcum mcd 1 GN=nifU PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.514e-15
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 243
            D ET  I+DA F+TFGCGSAIASSS  TE VKG  + + L I N +IA  L  LP  K+HCS++  + ++AAV +Y  +  +
Sbjct:   46 DPETDVILDAGFQTFGCGSAIASSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVANYRGEELR 127          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.477e-14
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAE 267
            E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y   R  P AA + +
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY---RGIPLAAHDED 138          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.235e-14
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDY 225
            E+ +IVD+ F+TFGC SAIASSS  TE +KG  + E L + N +IA +L  LP  K+HCS++ ++A++AA+ +Y
Sbjct:   54 ESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY 127          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_AQUAE (NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASE 261
            E   I D  FKTFGCGSAIA SS+ TE VKG  +Q  L++   +I + L  LPP K+HC+ L  + +  A+KDY  K+ +   AS+
Sbjct:   49 ENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRVEEASK 134          
BLAST of CB611121 vs. ExPASy Swiss-Prot
Match: NIFU_KLEPN (Nitrogen fixation protein nifU OS=Klebsiella pneumoniae GN=nifU PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGXQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            D ++  I +A F+TFGCGSAIASSS  TE + G  + E   I N +IA +L  LPP K+HCS++ ++A++AA+ ++  +
Sbjct:   46 DPQSEIIEEAGFQTFGCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGE 124          
The following BLAST results are available for this feature:
BLAST of CB611121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISU1_ENCCU1.109e-2268.83Iron sulfur cluster assembly protein 1 OS=Encephal... [more]
NIFU_AZOVI6.965e-1754.43Nitrogen fixation protein nifU OS=Azotobacter vine... [more]
NIFU_AZOCH8.514e-1548.78Nitrogen fixation protein nifU OS=Azotobacter chro... [more]
NIFU_ANASP2.477e-1445.45Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ3.235e-1448.65Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NIFU_AQUAE1.359e-1245.35NifU-like protein OS=Aquifex aeolicus GN=nifU PE=1... [more]
NIFU_KLEPN1.775e-1244.30Nitrogen fixation protein nifU OS=Klebsiella pneum... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_G02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611121 ID=CB611121; Name=CB611121; organism=Citrus sinensis; type=EST; length=391bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTTGGCTG
TGGCTCGGCCATCGCTTCTTCTTCTGTTGCAACGGAATGGGTGAAAGGGA
NNCAGATGCAGGAAGTCTTGTCCATTAAAAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAACCAAGTG
CTGCTTCAGAGGCAGAACTACCTCCAAGGGCTGCTGATGTTTGAAGATAT
TGATGTAAACATTTGAAAATGATGTTAATGTTCTGCCTGTGGAGATGTAT
CAGGATAACTGCACCTCCTAAAGATTGATGTCGGGTGGTGG
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