CB611182

Overview
NameCB611182
Unique NameCB611182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.199e-21
Identity = 46/81 (56.79%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSL 244
            A+LVA+KV+VT+K+NDD+ Y WES AGGSF V R  +   L RGTKIT+++KEDQ+++LEER++K+++ KHS+FI  P  L
Sbjct:  129 AFLVADKVVVTSKNNDDDSYQWESSAGGSFVV-RPYNDPELTRGTKITMYIKEDQVDFLEERKIKEIVKKHSQFIGYPIKL 208          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.097e-21
Identity = 45/81 (55.56%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSL 244
            A+LVA+KV+VT+K+NDD+ Y WES AGGSF V R  +   + RGTKI +H+KEDQ+++LEER++K+++ KHS+FI  P  L
Sbjct:  129 AFLVADKVVVTSKNNDDDSYQWESSAGGSFVV-RPFNDPEVTRGTKIVMHIKEDQIDFLEERKIKEIVKKHSQFIGYPIKL 208          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.804e-20
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI 226
            AYLVA++V VT+K+N DE Y+WES AGG+FT+T     + +    +ITLHLKEDQLEYLE RRLK+LI KHSEFI
Sbjct:  126 AYLVADRVTVTSKNNSDEVYVWESSAGGTFTITSAPESD-MKLPARITLHLKEDQLEYLEARRLKELIKKHSEFI 199          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.952e-20
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI 226
            AYLVAEKV +T KHND+EQY W S AG SFT+  D  GEP+ R TK+ LHLKEDQ EYLEER +K+++ KH +FI
Sbjct:  112 AYLVAEKVAIT-KHNDEEQYSWVSSAGSSFTLHVD-HGEPIDRDTKVILHLKEDQTEYLEERWVKEVVKKHPQFI 184          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.443e-19
Identity = 38/82 (46.34%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    5 YLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLWI 250
            +LVA+ V+VT+K NDD+QY+W S +  S+T+ +D  G  LGRGT+I+LH+K+D  E+L++  +K L+ K+S+FI+ P  L++
Sbjct:  177 FLVADSVVVTSKSNDDDQYVWTSDSQSSYTIAKDPKGNTLGRGTRISLHIKDDSKEFLDQEVIKQLVKKYSQFINFPIYLYV 258          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: ENPL_RAT (Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+ K+S+FI+ P  +W
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVRKYSQFINFPIYVW 282          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: ENPL_RABIT (Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+ K+S+FI+ P  +W
Sbjct:  123 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVW 203          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: ENPL_PONAB (Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+ K+S+FI+ P  +W
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVW 282          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: ENPL_PIG (Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+ K+S+FI+ P  +W
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVW 282          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: ENPL_MOUSE (Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+ K+S+FI+ P  +W
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVRKYSQFINFPIYVW 282          
The following BLAST results are available for this feature:
BLAST of CB611182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
HSP90_CAEBR6.199e-2156.79Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HSP90_CAEEL8.097e-2155.56Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP83_LEIAM1.804e-2064.00Heat shock protein 83 OS=Leishmania amazonensis GN... [more]
H90B4_HUMAN8.952e-2064.00Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
ENPL_DICDI4.443e-1946.34Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
ENPL_RAT1.429e-1753.66Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 S... [more]
ENPL_RABIT1.429e-1753.66Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN... [more]
ENPL_PONAB1.429e-1753.66Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1[more]
ENPL_PIG1.429e-1753.66Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3[more]
ENPL_MOUSE1.429e-1753.66Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_H04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611182 ID=CB611182; Name=CB611182; organism=Citrus sinensis; type=EST; length=322bp
AGCTTACTTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCACAACGATG
ATGAGCAGTACATCTGGGAGTCTCAGGCTGGTGGATCATTCACTGTTACC
AGGGACACTTCTGGTGAGCCTCTTGGCCGCGGTACAAAGATCACTCTCCA
CCTCAAGGAAGACCAACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATT
TGATTAATAAGCACTCTGAGTTCATTAGTAACCCAAGATCCCTCTGGATT
GAGAAGACCACTGAGAAGGAGATTTCTGATGATGAGGACGACGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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