CB611182

Overview
NameCB611182
Unique NameCB611182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HTPG_SHEON (Chaperone protein htpG OS=Shewanella oneidensis GN=htpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A++VA+KV V    A H  +E  +WES+  GSFTV   T      RGT+ITLHL++D+ E+ ++ RL+ +I K+S+ IS P  +W
Sbjct:  130 AFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVETITKAT---RGTEITLHLRDDEKEFADDWRLRSIITKYSDHISIPVEMW 211          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB9 (Chaperone protein htpG OS=Shewanella baltica (strain OS195) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.028e-12
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A++VA+KV V    A H  DE  +WES+  G+FTV   T      RGT+ITLHL++++ E+ ++ RL+ +I K+S+ IS P  +W
Sbjct:  130 AFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKAS---RGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB8 (Chaperone protein htpG OS=Shewanella baltica (strain OS185) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.028e-12
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A++VA+KV V    A H  DE  +WES+  G+FTV   T      RGT+ITLHL++++ E+ ++ RL+ +I K+S+ IS P  +W
Sbjct:  130 AFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKAS---RGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB5 (Chaperone protein htpG OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.028e-12
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A++VA+KV V    A H  DE  +WES+  G+FTV   T      RGT+ITLHL++++ E+ ++ RL+ +I K+S+ IS P  +W
Sbjct:  130 AFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKAS---RGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.999e-11
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQ--YIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLWI 250
            AYLVA++V V ++     Q  + W S+A GSFTV      E   RGT ITLHLKEDQ E+L E RL+ LI ++S+++ +P  L +
Sbjct:  136 AYLVADRVEVVSRAAGQGQSAWRWTSEAKGSFTVE---PAERAARGTSITLHLKEDQKEFLGEWRLRSLITQYSDYVGHPIKLQV 217          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HTPG_SHEFN (Chaperone protein htpG OS=Shewanella frigidimarina (strain NCIMB 400) GN=htpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.410e-11
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNPRSLW 247
            A++VA+KV V    A H  +E  +WES+  GSF V   T  E   RGT+I LHL++++ E+ ++ RL+ +I K+S+ IS P  +W
Sbjct:  130 AFIVAKKVTVRTRAAGHAANEGVLWESEGEGSFNVESITKNE---RGTEIVLHLRDEETEFADDYRLRSIITKYSDHISVPVQMW 211          
BLAST of CB611182 vs. ExPASy Swiss-Prot
Match: HTPG_ROSDO (Chaperone protein htpG OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=htpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.453e-11
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 AYLVAEKV-IVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFISNP 235
            A++VAE+V ++T K  +DE ++W S   G F++     GE    GT +TLHLK+D  E+LEE R++ +I  +SE IS P
Sbjct:  133 AFMVAERVDVLTRKAGEDESWLWSSDGKGEFSIE---PGERAQSGTTVTLHLKKDAKEFLEESRIRHIIKTYSEHISFP 208          
The following BLAST results are available for this feature:
BLAST of CB611182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
HTPG_SHEON3.084e-1243.53Chaperone protein htpG OS=Shewanella oneidensis GN... [more]
HTPG_SHEB94.028e-1242.35Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB84.028e-1242.35Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB54.028e-1242.35Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_MYXXD1.999e-1145.88Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_SHEFN3.410e-1141.18Chaperone protein htpG OS=Shewanella frigidimarina... [more]
HTPG_ROSDO4.453e-1143.04Chaperone protein htpG OS=Roseobacter denitrifican... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_H04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611182 ID=CB611182; Name=CB611182; organism=Citrus sinensis; type=EST; length=322bp
AGCTTACTTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCACAACGATG
ATGAGCAGTACATCTGGGAGTCTCAGGCTGGTGGATCATTCACTGTTACC
AGGGACACTTCTGGTGAGCCTCTTGGCCGCGGTACAAAGATCACTCTCCA
CCTCAAGGAAGACCAACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATT
TGATTAATAAGCACTCTGAGTTCATTAGTAACCCAAGATCCCTCTGGATT
GAGAAGACCACTGAGAAGGAGATTTCTGATGATGAGGACGACGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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