CF417071
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.838e-41 Identity = 71/131 (54.20%), Postives = 99/131 (75.57%), Query Frame = 2 Query: 26 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 418 GGWCN + HFD+SQP +++I Y AG++P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS TGW M+RNWG NWQ L GQ+LSF VT++ G+T+ + PAGWSFG+T+S Sbjct: 112 GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.032e-40 Identity = 71/133 (53.38%), Postives = 99/133 (74.44%), Query Frame = 2 Query: 20 NAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 418 N GGWCN + +FD+SQP +++I Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW M+RNWG NWQ L GQ+LSF VT++ G+T+ + PAGWSFG+T+S Sbjct: 101 NYGGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40 Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 2 Query: 2 NNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTY 415 N +N GGWCNPP+ HFDL++P F IA ++AG++PV+YRRV C + GGIRF G+ Y+ LV + NVGG GD+ +++KGSRTGW MS NWG ++Q+ + L GQSLSF +T+ R T+ +YN APA WS G+TY Sbjct: 112 NYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39 Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 2 Query: 17 NNAGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS--GAQF 430 NN GWCN P+ HFD+S P F IA+ G+VPV YRRV C RRGG+RFT+ G FN+V+I+NVGG G V +V+++GS+ W M+RNWG NWQS+ L GQ LSF+VT +D +T T NV P+ W FG+T+S G QF Sbjct: 110 NNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQF 251
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 2.103e-37 Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = 2 Query: 14 PNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSF-GRTYSG 421 PN+ WCNPPQ+HFDLSQP+F IA+Y+AGVVPV +RRVPC + GG++F I G+ +F ++L NVGGAG V A+ IKG+RT W M +NWGQ W + L GQ LSF +TTSDG +V P W G+++ G Sbjct: 174 PND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37 Identity = 72/130 (55.38%), Postives = 89/130 (68.46%), Query Frame = 2 Query: 32 WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 421 WC P +HFDLS P+F IAQ +A +VPV YRRVPC + GG++F + G+ +L NVGGAGD+ AVS KGS+T W MSR WGQNW +N L GQS+S VTTSDG T +V PA W FG+T+ G Sbjct: 129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36 Identity = 70/132 (53.03%), Postives = 92/132 (69.70%), Query Frame = 2 Query: 26 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTY 415 GGWCNPP+ HFDLS+P F +A +RAG+VPV YRRVPC R GG+RF + G+ Y+ L + NV GAGDV + +K G GW MS NWG ++Q+ L GQ+LSF+VT+ + G+T+ + V PA W FG TY Sbjct: 128 GGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32 Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 2 Query: 50 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 415 +HFDL+ P F IA+ + GVVPV+YR+V C R+GGI++TI G+ +N+V++ NVGGAGDV +++KG+ R W P+ R+WGQ W++ L G+SL+F V T D R TS+ VAP W++ TY Sbjct: 162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28 Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 2 Query: 11 LPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFEVTT--SDGRTVTSYNVAPAGWSFGRTYSGA 424 LPN+ GGWCNPP+ HFD++ P F +AQ AG+VPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S G W + NWG +Q L N L+ ++TT + +T+ + W G Y G+ Sbjct: 138 LPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14 Identity = 46/144 (31.94%), Postives = 70/144 (48.61%), Query Frame = 2 Query: 26 GGWCNPPQQHFDLSQPVFQHIAQY-------RAGVVPVAYRRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYLN---GQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 415 GG C HFD+S F +A AGV+ + Y+RVPC + F ++ S Y+ +L+ G GD+ AV I +R G W+ M ++WG W+ N+ S +T+ G+ + + NV P+GW G TY Sbjct: 124 GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267 The following BLAST results are available for this feature:
BLAST of CF417071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417071 ID=CF417071; Name=CF417071; organism=Citrus sinensis; type=EST; length=662bpback to top |