CF417071
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 51/150 (34.00%), Postives = 71/150 (47.33%), Query Frame = 2 Query: 26 GGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSI-----KGSRTGWQPMSRNWGQNWQSNTYLNGQS-----LSFEVTTSDGRTVTSYNVAPAGWSFGRTY 415 GG C HFDLS F +A+ AG +PV Y RVPC +G R + Y+ VL+ + G GD+ AV + G W M ++WG W+ N+ G + +S +T+ GRT+ + NV PAGW G TY Sbjct: 117 GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTY 263
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14 Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 2 Query: 26 GGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYRRVPCGRRG-GIRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSL----SFEVTTSDGRTVTSYNVAPAGWSFGRTY 415 GG C HFD+S +A+ AG++ V YRRVPC G I F ++ + ++ VLI G GD++AV + + GW PM +NWG W+ N+ G++L S +T+ G+ + + NV PA W G TY Sbjct: 143 GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13 Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 2 Query: 26 GGWCNPPQQHFDLSQPVFQHIA------QYRA-GVVPVAYRRVPCGRRGGIRFTI-----NGHSYFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 418 GG C HFDLS F +A Q RA GV+ + Y RVPC GG+ T + SYF VL+ G GD+ + + G+ W PM ++WG W+ + Q+ LS +T+S G+T+ + NV P+GW G +Y+ Sbjct: 116 GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNW-GGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTSSSGKTLVASNVIPSGWKPGASYT 259
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12 Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 2 Query: 26 GGWCNPPQQHFDLSQPVFQHIA------QYRA-GVVPVAYRRVPCGRRGGIRFT----INGHSYFNLVLITNVGGAGDVHAVSIK--GSRTGWQPMSRNWGQNWQSNTYLNGQS-LSFEVTTSDGRTVTSYNVAPAGWSFGRTY 415 GG C HFDLS F +A Q RA GV+ + Y RVPC GG++ T + + + VL+ G GD+ V + G+ W M ++WG W+ N Q+ S +T+S G+T+ + NV P+GW G +Y Sbjct: 116 GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNW-GGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGWKPGMSY 258 The following BLAST results are available for this feature:
BLAST of CF417071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417071 ID=CF417071; Name=CF417071; organism=Citrus sinensis; type=EST; length=662bpback to top |