CF417073

Overview
NameCF417073
Unique NameCF417073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB5 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB0057) GN=hdc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337
            CG+ + + +++  +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB3 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB307-0294) GN=hdc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337
            CG+ + + +++  +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBT (Histidine decarboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=hdc PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337
            CG+ + + +++  +S +V+Y+++RD TI GSRNGH  + +W  +  +     +  +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRHRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ENTAE (Histidine decarboxylase OS=Enterobacter aerogenes GN=hdc PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 39/131 (29.77%), Postives = 74/131 (56.49%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 391
            CG+ + +  +++ +S  ++Y+++ D TI GSRNGH P+ +W  +       + + +   L  A Y  DR   AGI A+ ++ S TVVF +P  E   ++  LA  GN+AH++    ++   ++D  ++++I
Sbjct:  241 CGIVVAKKANVDRISVEIDYISAHDKTISGSRNGHTPLMMWAAVRSHTDAEWHRRIGHSLNMAKYAVDRFKAAGIDALCHKNSITVVFPKP-SEWVWKKHCLATSGNVAHLITTAHHLDSSRIDALIDDVI 370          
The following BLAST results are available for this feature:
BLAST of CF417073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCHS_ACIB53.346e-1535.71Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIB33.346e-1535.71Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBT5.707e-1535.71Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ENTAE3.699e-1429.77Histidine decarboxylase OS=Enterobacter aerogenes ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-003 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A6 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417073 ID=CF417073; Name=CF417073; organism=Citrus sinensis; type=EST; length=611bp
TTGTGGTGTTCAAATAACGAGAATGGAACACATCAATGTCCTTTCAAGCA
ATGTAGAGTACCTTGCTTCAAGAGATGCCACAATCATGGGAAGCCGAAAT
GGCCATGCTCCTATCTTCCTCTGGTACACCCTCAATAGAAAAGGTTACAA
AGGGTTCCAGAAAGAAGTCCAGAAGTGTCTTAGAAATGCTCACTACTTGA
AGGACCGCCTTCTTGATGCTGGGATTAGTGCCATGTTGAATGAGCTTAGC
AGCACCGTTGTGTTTGAGCGTCCTCAAGATGAAGAGTTTGTCCGTAGGTG
GCAGCTTGCTTGCCAAGGTAACATTGCACATGTAGTAGTGATGCCCAATG
TCACAATTGACAAGCTGGATGATTTCTTGAACGAGTTAATAGAAAATCGC
TCAACATGGGTATGAGGATGGAAAAAGACAGCCTCCTTGCATTGCAGCAG
NATATAGGAAGTGAGAATTNGTGTTTCTGCTGCGCACAAGTGAAATCATT
ATGGCTTAGGATTGTTTCCNNTTGTTGTCTTGNTGTAGCAGAATTCTTTA
TTTGTAATGGAATCAGAATTTGTATCGGCAACATTTTCCAGTTTCTATAA
TGTTTCATATT
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