CF417073
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB5 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB0057) GN=hdc PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15 Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337 CG+ + + +++ +S +V+Y+++RD TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S TVVF P E ++ LA GN+AH++ Sbjct: 241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB3 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB307-0294) GN=hdc PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15 Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337 CG+ + + +++ +S +V+Y+++RD TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S TVVF P E ++ LA GN+AH++ Sbjct: 241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBT (Histidine decarboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=hdc PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15 Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337 CG+ + + +++ +S +V+Y+++RD TI GSRNGH + +W + + + +Q CL+ A Y DR GI A N S TVVF P E ++ LA GN+AH++ Sbjct: 241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRHRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ENTAE (Histidine decarboxylase OS=Enterobacter aerogenes GN=hdc PE=3 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14 Identity = 39/131 (29.77%), Postives = 74/131 (56.49%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 391 CG+ + + +++ +S ++Y+++ D TI GSRNGH P+ +W + + + + L A Y DR AGI A+ ++ S TVVF +P E ++ LA GN+AH++ ++ ++D ++++I Sbjct: 241 CGIVVAKKANVDRISVEIDYISAHDKTISGSRNGHTPLMMWAAVRSHTDAEWHRRIGHSLNMAKYAVDRFKAAGIDALCHKNSITVVFPKP-SEWVWKKHCLATSGNVAHLITTAHHLDSSRIDALIDDVI 370 The following BLAST results are available for this feature:
BLAST of CF417073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417073 ID=CF417073; Name=CF417073; organism=Citrus sinensis; type=EST; length=611bpback to top |