CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:41..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.096e-79
Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGGRLEDT L+ GI +DK MSHPQMPK ++NAK+AILTCPFEPPKPKTKHK+DI + E F+ LR  E++ F+ M+++ K+ GATL ICQWGFDDEANHLL   +LPAVRWVGG  I
Sbjct:  213 KVGGRLEDTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDYERETFETMIRQVKESGATLAICQWGFDDEANHLLQANDLPAVRWVGGPEI 329          

HSP 2 Score: 138.658 bits (348), Expect = 9.096e-79
Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G E+EL+AIAT  RIVPRF EL+ EKLG AGLVRE +FG  +DRML IE C N++AVTIF+RGGNKM+I+E KR++HDALCV RNL+R++ IVYG G
Sbjct:  326 GPEIELLAIATNARIVPRFSELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGG 422          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.051e-67
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRI------ENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGG 344
            +VGG + D++LI G+ +DKD SHPQMPK +      +  K+AILTCPFEPPKPKTKHK+DI +VE++Q L+  EQ  F +M+   K  GA +VICQWGFDDEANHLL+  +LPAVRWVGG
Sbjct:  229 RVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGG 348          

HSP 2 Score: 118.242 bits (295), Expect = 4.051e-67
Identity = 53/97 (54.64%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G ELE IAI+T GRIVPRFQ+L+ +KLG    + E+ FGTT+DRML IE    ++ VT F+RG NKM+++E +R++HD+LCV RNL++++ +VYG G
Sbjct:  348 GQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGG 444          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.620e-56
Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGG 344
            KVG  L  T LI GI ++K+ SHPQM K +++ +IA+L+CPFEPPK KTKH + I   ++++ L + E+K F +M++  K  G+ +V+CQWGFDDEAN LLM   LPAVRWVGG
Sbjct:  208 KVGRDLSSTALIKGIVINKEFSHPQMKKEVKDGRIALLSCPFEPPKLKTKHSLVISNPKEYKELEEYEKKKFAEMIESIKRSGSNIVMCQWGFDDEANSLLMENGLPAVRWVGG 321          

HSP 2 Score: 103.99 bits (258), Expect = 1.620e-56
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G ELEL+A+ TGG IV RF++L    LGKA  VRE+S GT  D+++ +E+   S+AVTI +RG N ++IEE KRSI DALC  RN++ N+ IVYG G
Sbjct:  321 GHELELLAVHTGGSIVARFEDLEESDLGKAR-VREESLGTENDKIIVVENEGCSKAVTILVRGANDLVIEEAKRSIRDALCAVRNILTNSRIVYGGG 416          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.710e-40
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG L D+ L+YGI +DK++ HP MP+R+ENAKI +L  P E  KP+   ++ I+  E+ +   QQE++    MV K   VGA +V+CQ G D+ A H L  + + AVR V
Sbjct:  189 KYGGALLDSMLVYGIVLDKEVVHPGMPRRVENAKIVLLDAPLEIEKPEIDAEIRINDPEQLEKFLQQEEEILMKMVDKIASVGANVVVCQKGIDEVAQHFLAKKGILAVRRV 300          

HSP 2 Score: 86.6557 bits (213), Expect = 2.710e-40
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +LE +  ATGGRIV   ++LTPE LG A LV E+  G  +D+M++IE C N R+V+I IRGG + +++E +RSI DAL    + +R+  ++ G G
Sbjct:  304 DLEKLERATGGRIVSNIEDLTPEDLGYAALVEERKVG--EDKMVFIEGCKNPRSVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGG 396          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.125e-38
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG L D++L+ GI +DK++ HP MPKR+ENAKI +L  P E  KP+   K+ +  +EK ++  ++E +   DMV+K    GA +VI Q G D+ A H L  + + AVR V
Sbjct:  207 KKGGSLLDSKLVRGIVLDKEVVHPAMPKRVENAKILVLDAPLEVQKPELTTKIRVTDIEKLESFLEEETRMLRDMVEKIAATGANVVITQKGIDEVAQHFLAKKGILAVRRV 318          

HSP 2 Score: 80.4925 bits (197), Expect = 4.125e-38
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++L PE LG A LV E+  G  +D+M++IE   N ++VTI +RG N M+++E +R+I DAL   RN++R   IV G G
Sbjct:  322 DIEKVAKATGAKIVTSLRDLKPEYLGYAELVEERKVG--EDKMVFIEGAKNPKSVTILLRGANDMLLDEAERNIKDALHGLRNILREPKIVGGGG 414          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.119e-38
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG +ED+ L++G+ +DK++ HP MP+R+E AKIA+L    E  KP+   K+ I + E+ +    +E KY  DMV K   +GA +VICQ G DD A H L  + + AVR V
Sbjct:  211 KKGGSIEDSMLVHGLVLDKEVVHPGMPRRVEKAKIAVLDAALEVEKPEISAKISITSPEQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDVAQHFLAKKGILAVRRV 322          

HSP 2 Score: 73.9442 bits (180), Expect = 9.119e-38
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +  A G RI+   ++ TPE LG A LV E+  G   D+M++IE   N +AV I +RG N M ++E +RSI+DAL   RN++    IV G G
Sbjct:  326 DIEKLEKALGARIISSIKDATPEDLGYAELVEERRVGN--DKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALHSLRNVLMKPMIVAGGG 418          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.120e-38
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            K GG + DT++IYGI VDK++ HP MPKR+ENAKIA+L    E  KP+   ++ I+   + +   ++E+    + V K    GA +VICQ G D+ A H L  + + AVR
Sbjct:  212 KHGGSINDTQIIYGIVVDKEVVHPGMPKRVENAKIALLDASLEVEKPELDAEIRINDPTQMKKFLEEEENLLKEKVDKIAATGANVVICQKGIDEVAQHYLAKKGILAVR 321          

HSP 2 Score: 83.1889 bits (204), Expect = 9.120e-38
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +LE +A ATGGR+V    ELTP+ LG A LV E+  G  +D+M+++E   N +AV+I IRGG + +++ET+R++ DAL    ++IR+   V G G
Sbjct:  327 DLEKLARATGGRVVSNIDELTPQDLGYAALVEERKVG--EDKMVFVEGAKNPKAVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGG 419          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.122e-38
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K G  +E+T+LI G+ +DK+  +PQMPK++ENAKIA+L CP E  + +T  ++ I    K     +QE+K   DMV+K    GA +V CQ G DD A H L  + + AVR V
Sbjct:  202 KEGAPIEETKLIRGVVIDKERVNPQMPKKVENAKIALLNCPIEVKETETDAEIRITDPAKLMEFIEQEEKMIKDMVEKIAATGANVVFCQKGIDDLAQHYLAKKGILAVRRV 313          

HSP 2 Score: 78.5666 bits (192), Expect = 9.122e-38
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG RIV +  +LTPE LG+AGLV E+      D M+++E C + +AVTI  RG  + ++EE  R+I DA+ V +  +    IV G G
Sbjct:  317 DMEKLAKATGARIVTKIDDLTPEDLGEAGLVEERK--VAGDAMIFVEQCKHPKAVTILARGSTEHVVEEVARAIDDAIGVVKCALEEGKIVAGGG 409          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.188e-37
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG LEDTEL+ G+ +DK+  HP MP+R+ENAKIA+L CP E  + +T  ++ I   E+ Q   ++E++   +MV K  + GA +V CQ G DD A H L  + + AVR V
Sbjct:  207 KEGGGLEDTELVKGMVIDKERVHPGMPRRVENAKIALLNCPIEVKETETDAEIRITDPEQLQAFIEEEERMLSEMVDKIAETGANVVFCQKGIDDLAQHYLAKKGILAVRRV 318          

HSP 2 Score: 72.7886 bits (177), Expect = 1.188e-37
Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +++ +A ATG RIV    +L+ E LG+A +V EK      D+M+++E C + +AVTI IRGG + +++E +R+I DA+ V    + +  +V G G
Sbjct:  322 DMQKLARATGARIVTNIDDLSEEDLGEAEVVEEKK--VAGDKMIFVEGCKDPKAVTILIRGGTEHVVDEAERAIEDAIGVVAAALEDGKVVAGGG 414          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.016e-37
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG + DT LI G+ +DK++ HP MPKRIENAKIA++    E  + +T  ++ I + E+ Q   +QE+K   +MV K K+VGA +V  Q G DD A H L    + AVR V
Sbjct:  205 KEGGAVRDTRLIRGVVIDKEVVHPGMPKRIENAKIALINDALEVKETETDAEIRITSPEQLQAFLEQEEKMLKEMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGILAVRRV 316          

HSP 2 Score: 80.1073 bits (196), Expect = 2.016e-37
Identity = 37/95 (38.95%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG+A LV E+      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  I+ G G
Sbjct:  320 DMEKLAKATGAKIVTNIRDLTPEDLGEAELVEERK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAIKVVKDILEDGKIIAGGG 412          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TCPE_CAEEL9.096e-7968.38T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPE_YEAST4.051e-6760.00T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPE_ENCCU1.620e-5653.51T-complex protein 1 subunit epsilon OS=Encephalito... [more]
THSB_DESMO2.710e-4043.75Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THSA_AERPE4.125e-3842.86Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_SULTO9.119e-3843.75Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSB_SULTO9.120e-3841.82Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THS_METJA9.122e-3843.75Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THS_METKA1.188e-3744.64Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THS_PYRHO2.016e-3744.64Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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