CF417075
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 4.136e-15 Identity = 29/99 (29.29%), Postives = 54/99 (54.55%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +L+ IA A+G I+ L E+ +A ++ + + D ++ I++ + +I +RG N M +E +RS+HDALCV + ++ + S+V G G Sbjct: 315 DLKRIAKASGATILSTLASLEGEESFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413 HSP 2 Score: 48.9062 bits (115), Expect = 4.136e-15 Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 3 Query: 9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338 G +++ LI G ++ ++ MPKRI NAKIA L + K K +V I EK +R++E + +QK GA +++ G DD + AVR V Sbjct: 202 GRSQKESMLINGYALNCVVASQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRKREADITKERIQKILATGANVILTTGGIDDMCLKYFVESMTIAVRRV 311
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3) HSP 1 Score: 50.8322 bits (120), Expect = 5.374e-15 Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 3 Query: 3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338 K GR + ++ LI G ++ + MPKRI NAKIA L + K K +V I EK +RQ+E + +QK GA +++ G DD + AVR V Sbjct: 199 KAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYFVEAGAMAVRRV 311 HSP 2 Score: 50.447 bits (119), Expect = 5.374e-15 Identity = 31/101 (30.69%), Postives = 54/101 (53.47%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +L+ +A A+G I+ L E+ LG+A V ++ D ++ I++ + +I +RG N M +E +RS+HDALCV + ++ S+V G G Sbjct: 315 DLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQERI--CDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGG 413
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 9.073e-15 Identity = 32/101 (31.68%), Postives = 55/101 (54.46%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +L+ IA A+G I+ L E+ LG+A V ++ D ++ I++ + +I +RG N M +E +RS+HDALCV + ++ + S+V G G Sbjct: 315 DLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERI--CDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413 HSP 2 Score: 47.7506 bits (112), Expect = 9.073e-15 Identity = 36/113 (31.86%), Postives = 52/113 (46.02%), Query Frame = 3 Query: 3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338 K GR + ++ LI G ++ + M KRI NAKIA L + K K +V I EK +RQ+E + +QK GA +++ G DD + AVR V Sbjct: 199 KAHGRSQIESMLINGYALNCVVGSQGMLKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 1.179e-14 Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTT---------QDRM----LYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +L+ IA + GG ++ + A L E+SF TT QDR+ L I +N ++ +I +RG N++M++E +RSIHD+LC+ + + + +IV G G Sbjct: 316 DLKRIAKSCGGTVL----------ITLANLEGEESFDTTALGIADEVVQDRLADDELIIVKNSNKKSASIILRGANELMLDEMERSIHDSLCIVKRTLESGTIVPGGG 413 HSP 2 Score: 45.4394 bits (106), Expect = 1.179e-14 Identity = 29/108 (26.85%), Postives = 47/108 (43.52%), Query Frame = 3 Query: 9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332 G +++ L+ G ++ ++ MPKRI+ AKIA L K K KV + V + +R +E + + GA +V+ G DD + AVR Sbjct: 203 GKSAKESTLVEGYALNCTVASEGMPKRIQGAKIAFLDFNLAKTKMKLGQKVVVTNVNDLEAIRDRENDIVKERISLIIKSGANVVLTTKGIDDLCLKYFVEAGCMAVR 310
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 1.531e-14 Identity = 29/99 (29.29%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +L+ IA A+G + L E+ +A ++ + + D ++ I++ + +I +RG N M +E +RSIHDALCV + ++ + S+V G G Sbjct: 318 DLKRIAKASGATVCSTLANLEGEESFEASMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIHDALCVVKRVLESKSVVPGGG 416 HSP 2 Score: 47.3654 bits (111), Expect = 1.531e-14 Identity = 33/110 (30.00%), Postives = 50/110 (45.45%), Query Frame = 3 Query: 9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338 G +++ L+ G ++ + M KRI NAKIA L + K K +V I EK +RQ+E + +QK GA +++ G DD + AVR V Sbjct: 205 GRSQKESILVNGYALNCVVGSQGMTKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVDAGAMAVRRV 314
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 1.993e-14 Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 1 Query: 361 IAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +A ATG + + +L LG+ V +SFG D + ++E A ++AVT+F+RGG + ++ E +R+I DA+ V I +V G G Sbjct: 322 LARATGAKRLGSLSDLDESDLGRVDAVSIRSFG--DDDLAFVEGGAAAKAVTLFLRGGTEHVVYELERAIEDAVDVVVAAIDKGGVVPGAG 410 HSP 2 Score: 45.4394 bits (106), Expect = 1.993e-14 Identity = 25/112 (22.32%), Postives = 47/112 (41.96%), Query Frame = 3 Query: 3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338 + G TEL+ G+ +DK+ + MP+ + +A +A+L + K + + +I +V++ E + D G +V C DD L + A + V Sbjct: 203 RTGASSSATELVEGVVLDKEPVNENMPRSVSDATVAVLDMKLDVRKSEVDTEYNITSVDQLTAAIDAEDSELRGYAKALADAGVDVVFCTKSIDDRVAGFLADAGILAFKSV 314
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 3.359e-14 Identity = 29/99 (29.29%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +L++IA ATG + + E+ A +V E + + D ++ I+ A +I +RG N +E +RS+HDALCV + ++ + +V G G Sbjct: 318 DLKIIAKATGAAFITSLTNMDGEESFDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALCVVKRVLESKKVVAGGG 416 HSP 2 Score: 46.2098 bits (108), Expect = 3.359e-14 Identity = 31/110 (28.18%), Postives = 50/110 (45.45%), Query Frame = 3 Query: 9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338 G ++ LI G ++ ++ QMPK+I NAKIA L + K K +V I+ +K + +R +E + + G +V+ G DD + AVR V Sbjct: 205 GKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMKMGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVDDLCMKYFVEAGAMAVRRV 314
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 4.365e-14 Identity = 25/94 (26.60%), Postives = 54/94 (57.45%), Query Frame = 1 Query: 352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +E + + TGG ++L+P+ LG +GLV +++ G +++ Y+ + ++ TI I+G + +TK ++ D L N++++ +I+ G G Sbjct: 325 MERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG--EEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAG 416 HSP 2 Score: 43.5134 bits (101), Expect = 4.365e-14 Identity = 29/114 (25.44%), Postives = 50/114 (43.86%), Query Frame = 3 Query: 21 EDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV----------GATLVICQWGFDDEANHLLMHRNLPAVR 332 +DT I G+ +D HP MP R++NA + IL E K + + ++ L E+K+ D ++K D+ ++I Q G D + + N+ A+R Sbjct: 205 KDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALR 318
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 9.578e-14 Identity = 31/94 (32.98%), Postives = 46/94 (48.94%), Query Frame = 1 Query: 352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +E +A+ TGG +V F E + KLG+ ++ E G + L C A TI +RG ++E +RS+HDAL V + V G G Sbjct: 314 VERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLG--EQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGG 405 HSP 2 Score: 40.817 bits (94), Expect = 9.578e-14 Identity = 31/90 (34.44%), Postives = 43/90 (47.78%), Query Frame = 3 Query: 6 VGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK---TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVI 266 +GG+L D+ L G + K + Q PKRIENAKI I + K K TK KV D+ K L + E++ + + K G I Sbjct: 199 LGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTKFKV--DSTAKLAQLEKAEREKMKNKIAKISKFGINTFI 285
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 3.536e-13 Identity = 27/95 (28.42%), Postives = 46/95 (48.42%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 ++ + ATG I + P+ +G L E G R C ++ TI +RGG + I+E +RS+HD++ + R ++ S+V G G Sbjct: 318 DIRRVCRATGAAIQNTTSNIIPDVIGTCDLFEEVQVGG--QRYNLFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGG 410 HSP 2 Score: 43.1282 bits (100), Expect = 3.536e-13 Identity = 28/107 (26.17%), Postives = 45/107 (42.06%), Query Frame = 3 Query: 9 GGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320 GG L D++ I G + + Q PK I+N K+ L E K ++ I K+Q+L E K F D ++ G +V+ + D A +N+ Sbjct: 202 GGGLGDSQFIAGAAFKRTFFYAGFEQQPKHIKNPKVLCLNIELELKAEKDNAEIRISDPTKYQSLVNAEWKLFFDKLEAIHASGVNVVLSKLAIGDLATQFFADKNM 308 The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bpback to top |