CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.136e-15
Identity = 29/99 (29.29%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA A+G  I+     L  E+  +A ++ +      +    D ++ I++     + +I +RG N  M +E +RS+HDALCV + ++ + S+V G G
Sbjct:  315 DLKRIAKASGATILSTLASLEGEESFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413          

HSP 2 Score: 48.9062 bits (115), Expect = 4.136e-15
Identity = 34/110 (30.91%), Postives = 52/110 (47.27%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            G   +++ LI G  ++  ++   MPKRI NAKIA L    +  K K   +V I   EK   +R++E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  202 GRSQKESMLINGYALNCVVASQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRKREADITKERIQKILATGANVILTTGGIDDMCLKYFVESMTIAVRRV 311          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 50.8322 bits (120), Expect = 5.374e-15
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 3
Query:    3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K  GR + ++ LI G  ++  +    MPKRI NAKIA L    +  K K   +V I   EK   +RQ+E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  199 KAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYFVEAGAMAVRRV 311          

HSP 2 Score: 50.447 bits (119), Expect = 5.374e-15
Identity = 31/101 (30.69%), Postives = 54/101 (53.47%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ +A A+G  I+     L  E+      LG+A  V ++      D ++ I++     + +I +RG N  M +E +RS+HDALCV + ++   S+V G G
Sbjct:  315 DLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQERI--CDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGG 413          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 9.073e-15
Identity = 32/101 (31.68%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEK------LGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA A+G  I+     L  E+      LG+A  V ++      D ++ I++     + +I +RG N  M +E +RS+HDALCV + ++ + S+V G G
Sbjct:  315 DLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERI--CDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGG 413          

HSP 2 Score: 47.7506 bits (112), Expect = 9.073e-15
Identity = 36/113 (31.86%), Postives = 52/113 (46.02%), Query Frame = 3
Query:    3 KVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K  GR + ++ LI G  ++  +    M KRI NAKIA L    +  K K   +V I   EK   +RQ+E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  199 KAHGRSQIESMLINGYALNCVVGSQGMLKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRV 311          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.179e-14
Identity = 35/108 (32.41%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTT---------QDRM----LYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA + GG ++          +  A L  E+SF TT         QDR+    L I   +N ++ +I +RG N++M++E +RSIHD+LC+ +  + + +IV G G
Sbjct:  316 DLKRIAKSCGGTVL----------ITLANLEGEESFDTTALGIADEVVQDRLADDELIIVKNSNKKSASIILRGANELMLDEMERSIHDSLCIVKRTLESGTIVPGGG 413          

HSP 2 Score: 45.4394 bits (106), Expect = 1.179e-14
Identity = 29/108 (26.85%), Postives = 47/108 (43.52%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            G   +++ L+ G  ++  ++   MPKRI+ AKIA L       K K   KV +  V   + +R +E     + +      GA +V+   G DD      +     AVR
Sbjct:  203 GKSAKESTLVEGYALNCTVASEGMPKRIQGAKIAFLDFNLAKTKMKLGQKVVVTNVNDLEAIRDRENDIVKERISLIIKSGANVVLTTKGIDDLCLKYFVEAGCMAVR 310          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.531e-14
Identity = 29/99 (29.29%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA A+G  +      L  E+  +A ++ +      +    D ++ I++     + +I +RG N  M +E +RSIHDALCV + ++ + S+V G G
Sbjct:  318 DLKRIAKASGATVCSTLANLEGEESFEASMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIHDALCVVKRVLESKSVVPGGG 416          

HSP 2 Score: 47.3654 bits (111), Expect = 1.531e-14
Identity = 33/110 (30.00%), Postives = 50/110 (45.45%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            G   +++ L+ G  ++  +    M KRI NAKIA L    +  K K   +V I   EK   +RQ+E     + +QK    GA +++   G DD      +     AVR V
Sbjct:  205 GRSQKESILVNGYALNCVVGSQGMTKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVDAGAMAVRRV 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.993e-14
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  361 IAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +A ATG + +    +L    LG+   V  +SFG   D + ++E  A ++AVT+F+RGG + ++ E +R+I DA+ V    I    +V G G
Sbjct:  322 LARATGAKRLGSLSDLDESDLGRVDAVSIRSFG--DDDLAFVEGGAAAKAVTLFLRGGTEHVVYELERAIEDAVDVVVAAIDKGGVVPGAG 410          

HSP 2 Score: 45.4394 bits (106), Expect = 1.993e-14
Identity = 25/112 (22.32%), Postives = 47/112 (41.96%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            + G     TEL+ G+ +DK+  +  MP+ + +A +A+L    +  K +   + +I +V++       E        +   D G  +V C    DD     L    + A + V
Sbjct:  203 RTGASSSATELVEGVVLDKEPVNENMPRSVSDATVAVLDMKLDVRKSEVDTEYNITSVDQLTAAIDAEDSELRGYAKALADAGVDVVFCTKSIDDRVAGFLADAGILAFKSV 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 3.359e-14
Identity = 29/99 (29.29%), Postives = 51/99 (51.52%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQ----DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L++IA ATG   +     +  E+   A +V E +    +    D ++ I+      A +I +RG N    +E +RS+HDALCV + ++ +  +V G G
Sbjct:  318 DLKIIAKATGAAFITSLTNMDGEESFDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALCVVKRVLESKKVVAGGG 416          

HSP 2 Score: 46.2098 bits (108), Expect = 3.359e-14
Identity = 31/110 (28.18%), Postives = 50/110 (45.45%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            G    ++ LI G  ++  ++  QMPK+I NAKIA L    +  K K   +V I+  +K + +R +E     + +      G  +V+   G DD      +     AVR V
Sbjct:  205 GKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMKMGVQVLINDPDKLEAIRARELDITKERINMILGTGVNVVLVSGGVDDLCMKYFVEAGAMAVRRV 314          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.365e-14
Identity = 25/94 (26.60%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E + + TGG      ++L+P+ LG +GLV +++ G  +++  Y+    + ++ TI I+G     + +TK ++ D L    N++++ +I+ G G
Sbjct:  325 MERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG--EEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAG 416          

HSP 2 Score: 43.5134 bits (101), Expect = 4.365e-14
Identity = 29/114 (25.44%), Postives = 50/114 (43.86%), Query Frame = 3
Query:   21 EDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV----------GATLVICQWGFDDEANHLLMHRNLPAVR 332
            +DT  I G+ +D    HP MP R++NA + IL    E  K +        + ++   L   E+K+ D  ++K  D+             ++I Q G D  +  +    N+ A+R
Sbjct:  205 KDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALR 318          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.578e-14
Identity = 31/94 (32.98%), Postives = 46/94 (48.94%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E +A+ TGG +V  F E +  KLG+  ++ E   G  +   L    C    A TI +RG     ++E +RS+HDAL V     +    V G G
Sbjct:  314 VERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLG--EQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGG 405          

HSP 2 Score: 40.817 bits (94), Expect = 9.578e-14
Identity = 31/90 (34.44%), Postives = 43/90 (47.78%), Query Frame = 3
Query:    6 VGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPK---TKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVI 266
            +GG+L D+ L  G  + K   + Q PKRIENAKI I     +  K K   TK KV  D+  K   L + E++   + + K    G    I
Sbjct:  199 LGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTKFKV--DSTAKLAQLEKAEREKMKNKIAKISKFGINTFI 285          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.536e-13
Identity = 27/95 (28.42%), Postives = 46/95 (48.42%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++  +  ATG  I      + P+ +G   L  E   G    R      C  ++  TI +RGG +  I+E +RS+HD++ + R   ++ S+V G G
Sbjct:  318 DIRRVCRATGAAIQNTTSNIIPDVIGTCDLFEEVQVGG--QRYNLFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGG 410          

HSP 2 Score: 43.1282 bits (100), Expect = 3.536e-13
Identity = 28/107 (26.17%), Postives = 45/107 (42.06%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL 320
            GG L D++ I G    +   +    Q PK I+N K+  L    E    K   ++ I    K+Q+L   E K F D ++     G  +V+ +    D A      +N+
Sbjct:  202 GGGLGDSQFIAGAAFKRTFFYAGFEQQPKHIKNPKVLCLNIELELKAEKDNAEIRISDPTKYQSLVNAEWKLFFDKLEAIHASGVNVVLSKLAIGDLATQFFADKNM 308          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TCPA_MONDO4.136e-1529.29T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA2_MOUSE5.374e-1532.74T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPA_RAT9.073e-1531.68T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_DICDI1.179e-1432.41T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_PALPA1.531e-1429.29T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
THS3_HALVO1.993e-1434.07Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPA_DROME3.359e-1429.29T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPZ_YEAST4.365e-1426.60T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPB_YEAST9.578e-1432.98T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPH_DICDI3.536e-1328.42T-complex protein 1 subunit eta OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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