CF417075
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 9.863e-13 Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332 + G + +++L+ G + KD H QMP +E+A + +L E + + V+I++ ++ Q+ QE+K + VQ+ D GA +V CQ G DD A H L + AVR Sbjct: 209 QTGHGVNESQLLRGAAISKDPVHDQMPAAVEDADVLLLNEAIEVEEAEADTSVNIESPDQLQSFLDQEEKQLKEKVQQIADTGANVVFCQKGIDDMAQHYLAKEGILAVR 318
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.698e-12 Identity = 32/94 (34.04%), Postives = 47/94 (50.00%), Query Frame = 1 Query: 352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +E +A+ TG IV F K+G L+ E G +D+++ + A TI +RG ++EE +RSIHDALCV + V G G Sbjct: 319 IERLALVTGAEIVSTFDHPELVKIGTCKLIEEVMIG--EDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRTVLGAG 410 HSP 2 Score: 34.6538 bits (78), Expect = 1.698e-12 Identity = 25/83 (30.12%), Postives = 41/83 (49.40%), Query Frame = 3 Query: 3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV 248 K GG L ++ L G ++K + PKR+EN KI I + K K KV +D++ + + E+ + M+ KCK + Sbjct: 203 KSGGSLRESYLDEGFILEKKIG-VGCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEK---EKMLNKCKKI 281
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2) HSP 1 Score: 51.6026 bits (122), Expect = 2.861e-12 Identity = 31/102 (30.39%), Postives = 55/102 (53.92%), Query Frame = 1 Query: 349 ELELIAIATGGRIVPRFQELTPEKLGKAGL-------VREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +L+ IA ATG + L ++ A L V+E+ + D ++ I+ + A +I +RG N +M++E +RS+HD+LCV R ++ + +V G G Sbjct: 318 DLKRIAKATGATLTVSLATLEGDEAFDASLLGHADEIVQER---ISDDELILIKGPKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVLESKKLVAGGG 416 HSP 2 Score: 40.4318 bits (93), Expect = 2.861e-12 Identity = 27/108 (25.00%), Postives = 46/108 (42.59%), Query Frame = 3 Query: 9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332 G ++ L+ G ++ ++ MP R++NAKIA L K V ++ K + +R++E + K GA +V+ G DD + AVR Sbjct: 205 GKSARESVLVKGYALNCTVASQAMPLRVQNAKIACLDFSLMKAKMHLGISVVVEDPAKLEAIRREEFDITKRRIDKILKAGANVVLTTGGIDDLCLKQFVESGAMAVR 312
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 2.864e-12 Identity = 29/94 (30.85%), Postives = 49/94 (52.13%), Query Frame = 1 Query: 352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633 +E +A+ GG IV F + G L+ E G +DR+L A ++ +RG + +++E++RS+HDALCV ++ + V G G Sbjct: 314 IERLALVLGGEIVSTFDSPQTAQFGSCDLIEEIMIG--EDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAG 405 HSP 2 Score: 35.039 bits (79), Expect = 2.864e-12 Identity = 24/79 (30.38%), Postives = 38/79 (48.10%), Query Frame = 3 Query: 3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQK 236 K+GG + ++ L G ++K + P+R+E AKI I P + K K +V +D V K L E+ + V K Sbjct: 198 KLGGSMNESYLDEGFLLEK-LPGMFQPRRVEKAKILIANTPMDTDKVKVFGSRVRVDGVAKVAELEAAEKLKMKEKVDK 275
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.393e-12 Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332 GG +E++ELI G+ VDK+ MP +E+A IA++ E + + +V++ ++ Q QE++ +MV KD GA +V G DD A H L + AVR Sbjct: 204 GGAIENSELIEGVIVDKERVSENMPYAVEDANIALVDDGLEVQETEIDTEVNVTDPDQLQNFLDQEEEQLKEMVDALKDAGANVVFADSGIDDMAQHYLAKEGILAVR 311 The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bpback to top |