CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.863e-13
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            + G  + +++L+ G  + KD  H QMP  +E+A + +L    E  + +    V+I++ ++ Q+   QE+K   + VQ+  D GA +V CQ G DD A H L    + AVR
Sbjct:  209 QTGHGVNESQLLRGAAISKDPVHDQMPAAVEDADVLLLNEAIEVEEAEADTSVNIESPDQLQSFLDQEEKQLKEKVQQIADTGANVVFCQKGIDDMAQHYLAKEGILAVR 318          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.698e-12
Identity = 32/94 (34.04%), Postives = 47/94 (50.00%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E +A+ TG  IV  F      K+G   L+ E   G  +D+++      +  A TI +RG    ++EE +RSIHDALCV    +     V G G
Sbjct:  319 IERLALVTGAEIVSTFDHPELVKIGTCKLIEEVMIG--EDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRTVLGAG 410          

HSP 2 Score: 34.6538 bits (78), Expect = 1.698e-12
Identity = 25/83 (30.12%), Postives = 41/83 (49.40%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV 248
            K GG L ++ L  G  ++K +     PKR+EN KI I     +  K K    KV +D++ +   +   E+   + M+ KCK +
Sbjct:  203 KSGGSLRESYLDEGFILEKKIG-VGCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEK---EKMLNKCKKI 281          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 2.861e-12
Identity = 31/102 (30.39%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGL-------VREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ IA ATG  +      L  ++   A L       V+E+    + D ++ I+   +  A +I +RG N +M++E +RS+HD+LCV R ++ +  +V G G
Sbjct:  318 DLKRIAKATGATLTVSLATLEGDEAFDASLLGHADEIVQER---ISDDELILIKGPKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVLESKKLVAGGG 416          

HSP 2 Score: 40.4318 bits (93), Expect = 2.861e-12
Identity = 27/108 (25.00%), Postives = 46/108 (42.59%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            G    ++ L+ G  ++  ++   MP R++NAKIA L       K      V ++   K + +R++E       + K    GA +V+   G DD      +     AVR
Sbjct:  205 GKSARESVLVKGYALNCTVASQAMPLRVQNAKIACLDFSLMKAKMHLGISVVVEDPAKLEAIRREEFDITKRRIDKILKAGANVVLTTGGIDDLCLKQFVESGAMAVR 312          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 2.864e-12
Identity = 29/94 (30.85%), Postives = 49/94 (52.13%), Query Frame = 1
Query:  352 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +E +A+  GG IV  F      + G   L+ E   G  +DR+L         A ++ +RG  + +++E++RS+HDALCV    ++ +  V G G
Sbjct:  314 IERLALVLGGEIVSTFDSPQTAQFGSCDLIEEIMIG--EDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAG 405          

HSP 2 Score: 35.039 bits (79), Expect = 2.864e-12
Identity = 24/79 (30.38%), Postives = 38/79 (48.10%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT-KHKVDIDTVEKFQTLRQQEQKYFDDMVQK 236
            K+GG + ++ L  G  ++K +     P+R+E AKI I   P +  K K    +V +D V K   L   E+    + V K
Sbjct:  198 KLGGSMNESYLDEGFLLEK-LPGMFQPRRVEKAKILIANTPMDTDKVKVFGSRVRVDGVAKVAELEAAEKLKMKEKVDK 275          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.393e-12
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 3
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            GG +E++ELI G+ VDK+     MP  +E+A IA++    E  + +   +V++   ++ Q    QE++   +MV   KD GA +V    G DD A H L    + AVR
Sbjct:  204 GGAIENSELIEGVIVDKERVSENMPYAVEDANIALVDDGLEVQETEIDTEVNVTDPDQLQNFLDQEEEQLKEMVDALKDAGANVVFADSGIDDMAQHYLAKEGILAVR 311          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
THSB_HALSA9.863e-1332.73Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPB_DICDI1.698e-1234.04T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPA_CAEEL2.861e-1230.39T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPB_CAEEL2.864e-1230.85T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
THSA_HALSA6.393e-1234.26Thermosome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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