CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.496e-34
Identity = 46/112 (41.07%), Postives = 69/112 (61.61%), Query Frame = 3 
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K G  + +T+LI G+ +DK++ HP MPKR+ENAKIA++    E  + +T  ++ I + E+ Q   +QE++   +MV K K+VGA +V  Q G DD A H L    + AVR V
Sbjct:  205 KEGASVHETQLIRGVVIDKEVVHPGMPKRVENAKIALINDALEVKETETDAEIRITSPEQLQAFLEQEERMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316

HSP 2 Score: 75.0998 bits (183), Expect = 1.496e-34
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG+A LV ++      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  I+   G
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGG 412
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.510e-34
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K G  +E++EL+ G+ +DK++ HP+MPKR+ENAKIA++    E  K +T  K++I + ++  +  +QE+K   DMV      GA +V  Q G DD A H L    + AVR V
Sbjct:  205 KAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316

HSP 2 Score: 73.1738 bits (178), Expect = 9.510e-34
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG A +V E+      + M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++   G
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG--ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGG 412
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.510e-34
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K G  +E++EL+ G+ +DK++ HP+MPKR+ENAKIA++    E  K +T  K++I + ++  +  +QE+K   DMV      GA +V  Q G DD A H L    + AVR V
Sbjct:  205 KAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316

HSP 2 Score: 73.1738 bits (178), Expect = 9.510e-34
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG A +V E+      + M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++   G
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG--ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGG 412
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.239e-33
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 3 
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K G  +++TELI G+ +DK+   PQMPK+IENAKIA+L CP E  + +T  ++ I    K     +QE+K   DMV   K  GA ++ CQ G DD A H L    + AVR V
Sbjct:  200 KEGASVDETELINGVLIDKERVSPQMPKKIENAKIALLNCPIEVKETETDAEIRITDPTKLMEFIEQEEKMLKDMVDTIKASGANVLFCQKGIDDLAQHYLAKEGILAVRRV 311

HSP 2 Score: 68.5514 bits (166), Expect = 1.239e-33
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E ++ ATG  +V   ++L  E LG+AG+V E+      D M+++E C + +AVT+ IRG  + +IEE  R++ DA+ V    I +  IV G G
Sbjct:  315 DMEKLSKATGANVVTNIKDLKAEDLGEAGIVEERKIAG--DAMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAIGVVACTIEDGKIVAGGG 407
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.563e-33
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 3 
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K G  +E++EL+ G+ +DK++ HP+MPKR+E AKIA++    E  K +T  K++I + ++  +  +QE+K   DMV      GA +V  Q G DD A H L    + AVR V
Sbjct:  205 KAGEGVEESELVRGVVIDKEVVHPRMPKRVEGAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRV 316

HSP 2 Score: 73.559 bits (179), Expect = 3.563e-33
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV   ++LTPE LG A +V E+      + M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++   G
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGYAEIVEERKLAG--ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGG 412
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.176e-31
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 3 
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG + DT+ I GI +DK+  H +MP  ++NAKIA++    E  K + + KV I    K Q    QE   F  MV+K K  GA +V+CQ G DD A H L    + AVR V
Sbjct:  202 KNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRV 313

HSP 2 Score: 68.1662 bits (165), Expect = 3.176e-31
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            ++E +A ATG +IV    +LTP  LG+A  V E+  G   DRM ++  C N +AV+I IRGG   ++ E +R+++DA+ V      +   ++G G
Sbjct:  317 DMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG--DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGG 409
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.033e-28
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            K GG ++DT+LI GI VDK+  HP MP  +++AKIA+L  P E  KP+    + I+     Q    QE+    +MV K K VGA +VI Q G DD A H L    + AVR V
Sbjct:  203 KQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRV 314

HSP 2 Score: 56.225 bits (134), Expect = 3.033e-28
Identity = 30/95 (31.58%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +++ +A ATG  IV    E++   LG A  V +   G  +D M ++  C N +AV+I +RG  + +++E +RSI D+L V  + + + +   G G
Sbjct:  318 DMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG--EDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGG 410
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.712e-28
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 3 
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            G  + ++ ++ GI +DK  +   MPKRIE A+IA+L  P E    +T  K+ +    + Q   +QE++   DMV+K K  GA +V CQ G DD A H L    + A++ V
Sbjct:  200 GASVNESRIVNGIVIDKSRADTSMPKRIEKARIALLKYPIEVKDLETDAKIRLTDPSQMQAFIEQEEQMIRDMVEKIKSSGANVVFCQKGIDDLALHYLSREGIMALKRV 309

HSP 2 Score: 65.4698 bits (158), Expect = 8.712e-28
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +++ I  ATG R+V    +LT E LG+AG++ EK      + + +IE C + +A++I +RG  K + EE +R++ DA+ V  + + +  +V G G
Sbjct:  313 DIKRIEKATGARLVTNIDDLTAEDLGEAGVIYEKKI--FDEVLTFIEECRDPKAISIILRGSTKHVAEEMERALEDAIGVVASTLEDREVVAGGG 405
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.074e-24
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 3 
Query:    6 VGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVR 332
            VGG ++++EL+ G+ VDK+     MP  +E+A IAIL    E  + +   +V++   ++ Q    QE+K   +MV +  +VGA  V    G DD A H L    + AVR
Sbjct:  204 VGGTIDNSELVEGVIVDKERVDENMPYAVEDANIAILDDALEVRETEIDAEVNVTDPDQLQQFLDQEEKQLKEMVDQLVEVGADAVFVGDGIDDMAQHYLAKEGILAVR 312

HSP 2 Score: 64.6994 bits (156), Expect = 1.074e-24
Identity = 31/95 (32.63%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  349 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            +L+ +A ATGGR+V    ++  + LG AG V +K  G   D  +++E   ++++VT+ +RGG + +++E +R+I D+L V R  + +  ++ G G
Sbjct:  318 DLKRLARATGGRVVSSLDDIEADDLGFAGSVGQKDVG--GDERIFVEDVEDAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGG 410
[Close]
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.532e-23
Identity = 34/110 (30.91%), Postives = 63/110 (57.27%), Query Frame = 3 
Query:    9 GGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWV 338
            GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V
Sbjct:  206 GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRV 315

HSP 2 Score: 59.3066 bits (142), Expect = 2.532e-23
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:  361 IAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            IA A G RIV R +EL  E +G  AGL+  K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V G G
Sbjct:  323 IARACGARIVSRPEELREEDVGTGAGLLEIKKIG--DEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 412
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
THS_DESSY1.496e-3441.07Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSA_THEK19.510e-3440.18Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO9.510e-3440.18Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THS_METTL1.239e-3343.75Thermosome subunit OS=Methanococcus thermolithotro... [more]
THSA_THEK83.563e-3339.29Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_THEAC3.176e-3141.96Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSB_THEAC3.033e-2843.75Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSA_METTH8.712e-2836.36Thermosome subunit alpha OS=Methanobacterium therm... [more]
THS1_HALVO1.074e-2434.86Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
TCPG_BOVIN2.532e-2330.91T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
back to top