CF417077 | Citrus Genome Database

Overview


Name	CF417077
Unique Name	CF417077
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	703

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig242	contig	Csv1_Contig242:6..704.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.892e-74
Identity = 94/121 (77.69%), Postives = 101/121 (83.47%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 100.908 bits (250), Expect = 2.892e-74
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQDCPXWC 633
            RGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++ +    ++  P  C
Sbjct:  116 RGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGC 195

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.772e-74
Identity = 94/121 (77.69%), Postives = 101/121 (83.47%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 100.523 bits (249), Expect = 3.772e-74
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQ 615
            RGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+ AD  E  V E+
Sbjct:  116 RGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFN-ADEFENMVAEK 188

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 3.772e-74
Identity = 94/121 (77.69%), Postives = 101/121 (83.47%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 100.523 bits (249), Expect = 3.772e-74
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQ 615
            RGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+ AD  E  V E+
Sbjct:  116 RGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFN-ADEFENMVAEK 188

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 199.134 bits (505), Expect = 3.772e-74
Identity = 94/121 (77.69%), Postives = 101/121 (83.47%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 100.523 bits (249), Expect = 3.772e-74
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQ 615
            RGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+ AD  E  V E+
Sbjct:  116 RGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFN-ADEFENMVAEK 188

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 4.920e-74
Identity = 94/121 (77.69%), Postives = 101/121 (83.47%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 100.138 bits (248), Expect = 4.920e-74
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQ 615
            RGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+ AD  E +V ++
Sbjct:  116 RGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFN-ADEFEDKVAKK 188

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.157e-73
Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G K+  VD+FP CVHLVS E E +SSEALEA RI CNKY+ K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 93.2041 bits (230), Expect = 3.157e-73
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADY 591
            RGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++
Sbjct:  116 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEF 181

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.371e-73
Identity = 93/121 (76.86%), Postives = 100/121 (82.64%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPAR YR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARRYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 101.293 bits (251), Expect = 5.371e-73
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQDCPXWC 633
            RGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++ ++   ++  P  C
Sbjct:  116 RGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGC 195

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 5.371e-73
Identity = 92/121 (76.03%), Postives = 100/121 (82.64%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 102.449 bits (254), Expect = 5.371e-73
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQDCPXWCECXAFSGCHGPL 669
            RGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++ ++   +   P  C    +   HGPL
Sbjct:  116 RGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCG-VKYVPSHGPL 206

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.647e-72
Identity = 89/115 (77.39%), Postives = 96/115 (83.48%), Query Frame = 3

Query:   66 RCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            RCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGM G F K
Sbjct:    2 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK 116

HSP 2 Score: 102.064 bits (253), Expect = 7.647e-72
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQDCPXWCECXAFSGCHGPL 669
            RGAFGKPQGT ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   + E+   ++  P  C      G  GPL
Sbjct:  111 RGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPG-RGPL 201

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.300e-71
Identity = 92/121 (76.03%), Postives = 104/121 (85.95%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR  KNKPY KSR+CRGVPD KIRI+D+G KK   DEFP CVHL+S EKE +SSEA+EA RI+CNKY++K  GKD+FH+RVRVHP+HVLRINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGK 121

HSP 2 Score: 90.5077 bits (223), Expect = 1.300e-71
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQDCPXWCECXAFSGCHGPLAQ 675
            RGAFGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y +++   +           +  HG LAQ
Sbjct:  116 RGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITN-HGTLAQ 208

The following BLAST results are available for this feature:

BLAST of CF417077 vs. ExPASy Swiss-Prot

BLAST of CF417077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
RL10L_MOUSE	2.892e-74	77.69	60S ribosomal protein L10-like OS=Mus musculus GN=...	[more]
RL10_SHEEP	3.772e-74	77.69	60S ribosomal protein L10 OS=Ovis aries GN=RPL10 P...	[more]
RL10_PIG	3.772e-74	77.69	60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P...	[more]
RL10_BOVIN	3.772e-74	77.69	60S ribosomal protein L10 OS=Bos taurus GN=RPL10 P...	[more]
RL10L_BOVIN	4.920e-74	77.69	60S ribosomal protein L10-like OS=Bos taurus GN=RP...	[more]
RL10_BOMMA	3.157e-73	76.86	60S ribosomal protein L10 OS=Bombyx mandarina GN=R...	[more]
RL10_MACFA	5.371e-73	76.86	60S ribosomal protein L10 OS=Macaca fascicularis G...	[more]
RL10L_HUMAN	5.371e-73	76.03	60S ribosomal protein L10-like OS=Homo sapiens GN=...	[more]
RL10_CHICK	7.647e-72	77.39	60S ribosomal protein L10 (Fragment) OS=Gallus gal...	[more]
RL10_DICDI	1.300e-71	76.03	60S ribosomal protein L10 OS=Dictyostelium discoid...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-007 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417077 ID=CF417077; Name=CF417077; organism=Citrus sinensis; type=EST; length=703bp
GCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATG
GGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCC
AAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACG
ATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCAC
CTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGC
CCGTATCGCTTGCAACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTT
TCCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAG
ATGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGGAGGGGTG
CTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTC
TTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGGC
CCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCA
GCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTNGAGGTG
GAAGTCGGAGAACAGGATTGTCCCNGATGGTGTGAATGCCNAGCNTTCTC
NGGATGTCATGGTCCTTTGGCTCAACGCCCACCTGGAAGAGCTTTCCTGG
AAG