CF417077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 6.971e-24 Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413 M R+P R Y++ Y + + GVP K+ +D+G +E P V LV E + +ALEAARI+ N+Y+ GK + +VRV+P VLR NK + AGADR+ GM F KA Sbjct: 1 MARKPGRMYKKFSGPAYTRREYMGGVPGVKVAQFDMGNL---TEELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKA 119 HSP 2 Score: 42.743 bits (99), Expect = 6.971e-24 Identity = 22/54 (40.74%), Postives = 32/54 (59.26%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555 R AFGK GT ARV GQ + ++ +N A+EA+RRA K P +++V + Sbjct: 113 RRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLPTPYRVVVEK 166
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 7.456e-23 Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKK-KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 M RPARCY++IK +PY + ++ G P +I +++G K K + F L E + ALEAAR KY++K F+L++ +P HV+R NKML+ AGADRLQ GM F Sbjct: 1 MPLRPARCYKRIK-RPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAF 119 HSP 2 Score: 45.0542 bits (105), Expect = 7.456e-23 Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 558 R AFG P G ++ G+VL+ V +D N HA+EAL RA+ K P +I ++RK Sbjct: 116 RLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPLPCRIELTRK 170
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.267e-22 Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 3 Query: 90 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 + Y + + + +P KI YD+G EFP + + ++ ALEAARIA N+YM + AG+ +HL++RV+P H++R N M + AGADR+Q GM F K Sbjct: 3 RAYTRREYIKKIPGSKIVQYDMGNLSA---EFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGK 106 HSP 2 Score: 44.669 bits (104), Expect = 1.267e-22 Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555 R AFGKP T A V Q ++++ N A+EALRRA KFP +I++ R Sbjct: 101 RKAFGKPVSTVALVKKNQKIITIETNKKNFKDAKEALRRAAMKFPVPCRIVIDR 154
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.643e-22 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 M +PAR Y +I Y + F GVP PKI + G +KK +F + LV+ E + ALEAAR++ N+ + AG D + L++R +P V+R +KM + AGADR+ +GM F Sbjct: 1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAF 116 HSP 2 Score: 44.669 bits (104), Expect = 1.643e-22 Identity = 21/54 (38.89%), Postives = 34/54 (62.96%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555 R AFG+P GT ARV GQ+++ R +N+ ++AL +A K P K++V++ Sbjct: 113 RAAFGRPVGTAARVYPGQIIMVGRVDRNNAKLLKDALHKASIKLPTPCKVVVTK 166
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.142e-22 Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413 M R+PAR YR + K Y + + GVP K+ +D+G ++FP +HL + E + A+EAARI N+ + K G++ FHL++R +P HVLR +K + AGADR+ GM F KA Sbjct: 1 MVRKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKA 119 HSP 2 Score: 32.7278 bits (73), Expect = 2.142e-22 Identity = 20/52 (38.46%), Postives = 28/52 (53.85%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 549 R AFGK GT ARVA Q + +V A++AL + +K P ++IV Sbjct: 113 RLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.781e-22 Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-YAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 M RP RCYR+ Y + + G+P PKI + +G ++ + + L++ EK + ALEAAR+ KY++K A + F L V +P HV+R NKM++ AGADRLQ GM F K Sbjct: 1 MPLRPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGK 119 HSP 2 Score: 41.5874 bits (96), Expect = 2.781e-22 Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 552 R +FGKP GT AR+ +G++++ VR K + A+EAL+ A K P R KI +S Sbjct: 114 RLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTKIEIS 167
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.621e-22 Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413 M R+P + YR + K Y + ++ GVP KI +++G + EFP + L E + ALEAARIA N+ M G+ FH ++R +P HVLR NK + AGADR+ GM F KA Sbjct: 1 MVRKPGKMYRNLAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKA 119 HSP 2 Score: 36.5798 bits (83), Expect = 3.621e-22 Identity = 18/54 (33.33%), Postives = 29/54 (53.70%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555 R AFGK GT ARV Q + +V + +++ALR +K P ++++ R Sbjct: 113 RMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.711e-22 Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 M R+PA YR +K++ + + ++ GVP ++ +D+G K +FP + L++ E+ + ALEAARI N+ M AG+ FH+++RV+P VLR NK + AGADR+ +GM + K Sbjct: 1 MVRKPASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGK 118 HSP 2 Score: 33.4982 bits (75), Expect = 4.711e-22 Identity = 19/54 (35.19%), Postives = 29/54 (53.70%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555 R A+GK T ARV+ Q + ++ + A++ALRRA K P I+V + Sbjct: 113 RAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.126e-22 Identity = 51/122 (41.80%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 M RP RCYR Y + + GVP PKI + +G KK D F V L++ + + ALEAAR+ K M G + F+L V +P HV+R NKM++ AGADRLQ GM F K Sbjct: 1 MPLRPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGK 119 HSP 2 Score: 37.3502 bits (85), Expect = 6.126e-22 Identity = 19/53 (35.85%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 549 R +FGKP GT AR+ +G +++++R K + A++A + A K P +I+V Sbjct: 114 RLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.038e-21 Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413 M R+PA+ YR + K Y + + GVP KI +D+G +++P + +V E + ALEAARI N+ + K G+ FHL++R P HVLR NK + AGADR+ GM F KA Sbjct: 1 MVRKPAKMYRNLAKKAYTRREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKA 119 HSP 2 Score: 35.4242 bits (80), Expect = 1.038e-21 Identity = 21/54 (38.89%), Postives = 28/54 (51.85%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555 R AFGK GT ARV GQ + SV A+ +L+R +K P +I+ R Sbjct: 113 RLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166 The following BLAST results are available for this feature:
BLAST of CF417077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417077 ID=CF417077; Name=CF417077; organism=Citrus sinensis; type=EST; length=703bpback to top |