CF417078

Overview
NameCF417078
Unique NameCF417078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.841e-51
Identity = 120/233 (51.50%), Postives = 151/233 (64.81%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQ----RGEAEGHTSSVE*VR*HVKRLCL--VHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLTF+L K VP +IS+NI  +LS+AF PLGISD+NSIFWIA P      GP+ +    Q    + E    T  V     ++   C+  +     +K +  G ++    +GL     FGFGPGLT++
Sbjct:   79 KRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIFWIAHP-----GGPAILDQVEQKVNLKPEKMNATRDVLSNYGNMSSACVFFIMDLMRKKSLEEGLKT--TGEGLDWGVLFGFGPGLTIE 304          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: THS3_ARAHY (Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.118e-50
Identity = 117/229 (51.09%), Postives = 147/229 (64.19%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP--RWARNSGPSGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE+P+++LVST Q ++P S GAI G LREVGLTF+L K VP +IS+NI  +L++AF PLGISD+NSIFWIA P  R   +     V   P++ +A   T  V     ++   C+       ++           +GL     FGFGPGLT++
Sbjct:  155 KRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVEKPIFELVSTDQKLVPGSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALNKAFDPLGISDYNSIFWIAHPGGRAILDQVEQKVNLKPEKMKA---TRDVLSNYGNMSSACVFFIMDLMRKRSLEEGLKTTGEGLDWGVLFGFGPGLTIE 380          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.316e-49
Identity = 84/149 (56.38%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    4 RFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP 450
            R MMYQQGC AG  +LRLAKDLAENNKG RVLVVCSE+    FRGP+    D+L+ Q LF            P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++NIE  L +AF P GISDWNSIFWI  P
Sbjct:  162 RLMMYQQGCNAGAVMLRLAKDLAENNKGGRVLVVCSEVMLSVFRGPSLQQEDNLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNIEDCLVKAFEPFGISDWNSIFWILHP 310          

HSP 2 Score: 51.2174 bits (121), Expect = 1.316e-49
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  443 LHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLF 571
            LHPGG AILD VE           A+R VLS+YGN++SACVLF
Sbjct:  308 LHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLF 350          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: DPS2_PINST (Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.753e-49
Identity = 113/229 (49.34%), Postives = 140/229 (61.14%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP--RWARNSGPSGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR  ++Q GCFAGGTVLRLAKDLAENN+GARVLVVCSE TAVTFRGP++THLD LVG ALF            P   VE+P +++V T+QT++P+SDGAI G LREVGLTF L   VP LIS NIEK L EAF+   ISDWN +FWIA P  R   +   + +   P +  A  H  S      ++   C+     + ++    +       G      FGFGPGLTV+
Sbjct:  161 KRVGVFQHGCFAGGTVLRLAKDLAENNRGARVLVVCSENTAVTFRGPSETHLDGLVGLALFGDGAAALIVGADPIPQVEKPCFEIVWTAQTVVPNSDGAISGKLREVGLTFQLKGAVPDLISTNIEKCLVEAFSQFNISDWNQLFWIAHPGGRAILDQVEASLNLDPTKLRATRHVMS---EYGNMSSACVHFILDETRKASRQNGCSTSGGGFQMGVLFGFGPGLTVE 386          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: 2PS_GERHY (2-pyrone synthase OS=Gerbera hybrida GN=2PS PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.595e-49
Identity = 107/229 (46.72%), Postives = 144/229 (62.88%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP--RWARNSGPSGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR+M+YQQGC AGGTVLRLAKDLAENNKG+RVL+VCSEITA+ F GP + HLDSLV QALF            P  +VERP++++VST QTILPD++ A+  HLRE GLTF L +DVP +++KNIE +  +A +PLGI+DWNS+FW+  P  R   +     +     +  A  H  S      ++   C++    + ++           +GL     FGFGPG+TV+
Sbjct:  160 KRYMLYQQGCAAGGTVLRLAKDLAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILPDTEKAMKLHLREGGLTFQLHRDVPLMVAKNIENAAEKALSPLGITDWNSVFWMVHPGGRAILDQVERKLNLKEDKLRASRHVLS---EYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVE 385          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: DPS1_PINST (Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.046e-48
Identity = 112/229 (48.91%), Postives = 139/229 (60.70%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP--RWARNSGPSGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR  ++Q GCFAGGTVLRLAKDLAENN+GARVLVVCSE TAVTFRGP++THLD LVG ALF            P   VE+P +++V T+QT++P+SDGAI G LREVGLTF L   VP LIS NIEK L EAF+   ISDWN +FWIA P      +   + +   P +  A  H  S      ++   C+     + ++    +       G      FGFGPGLTV+
Sbjct:  161 KRVGVFQHGCFAGGTVLRLAKDLAENNRGARVLVVCSENTAVTFRGPSETHLDGLVGLALFGDGASALIVGADPIPQVEKPCFEIVWTAQTVVPNSDGAISGKLREVGLTFQLKGAVPDLISTNIEKCLVEAFSQFNISDWNQLFWIAHPGGHAILDQVEASLNLDPTKLRATRHVMS---EYGNMSSACVHFILDETRKASRQNGCSTSGGGFQMGVLFGFGPGLTVE 386          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSY_EQUAR (Chalcone synthase OS=Equisetum arvense GN=CHS PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.046e-48
Identity = 120/243 (49.38%), Postives = 146/243 (60.08%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAF---------APLGISDWNSIFWIAPPRWARNSGPS-------GV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR MMYQQGCFAGGTVLR+AKD+AENNKGARVLVVCSEIT VTFRGP++THLDSLVGQALF            P    E P ++L  +   ILPDSDGAIDGHLREVGLTFHL+KDVPG+ISKNI K L++AF         A    +  N IFWIA P      GP+        +   P++  A   T  V     ++   C++      + +   ++     +GL      GFGPGLTV+
Sbjct:  161 KRLMMYQQGCFAGGTVLRVAKDVAENNKGARVLVVCSEITCVTFRGPSETHLDSLVGQALFGDGAAAVILGSDP-LPEENPCFELHWSGSNILPDSDGAIDGHLREVGLTFHLMKDVPGIISKNIGKVLNDAFRSAFDESGNAEDRPASVNDIFWIAHP-----GGPAILDQVEEKMKLAPEKMRA---TRDVLSEYGNMSSACVLFIMDHMRRMSAQNKLQTTGEGLDWGVLLGFGPGLTVE 394          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: VPS_PSINU (Phloroisovalerophenone synthase OS=Psilotum nudum GN=VPS PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.785e-48
Identity = 71/153 (46.41%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    4 RFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI----EKSLSEAFAPLGISDWNSIFWIAPP 450
            R M+YQQGCFAG TVLR+AKDLAENNKG+R+LVVCSE+T ++FRGP + H ++LVGQALF            P    E   +++     +++PDSD A+ G+++E GL  HL K +P LI +NI    + +L E F     S +N +FW+  P
Sbjct:  163 RVMVYQQGCFAGCTVLRIAKDLAENNKGSRILVVCSELTLISFRGPTEDHPENLVGQALFGDGAAALIVGADPIPHAENASFEIHWARSSVVPDSDDAVTGNIKENGLVLHLSKTIPDLIGQNIHTLLKDALEEMFDACNPSSFNDLFWVIHP 315          

HSP 2 Score: 65.855 bits (159), Expect = 6.785e-48
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  443 LHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKAT 619
            +HPGGPAILD VE           A+R++LS+YGNM S  VLF+LD MRK+SV+E  +T
Sbjct:  313 IHPGGPAILDAVEEELNLKSERTHASREILSQYGNMVSPGVLFVLDYMRKRSVDERLST 371          

HSP 3 Score: 23.0978 bits (48), Expect = 6.785e-48
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  621 TGEGLXWGVL 650
            TGEGL WGV+
Sbjct:  372 TGEGLEWGVM 381          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.131e-48
Identity = 84/149 (56.38%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    4 RFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP 450
            R MMYQQGC AG  +LRLAKDLAENNKG RVLVVCSE+    FRGP+    D L+ Q LF            P   +E PL++LVS +QT +PD+D  +  HLRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI  P
Sbjct:  159 RLMMYQQGCNAGAAMLRLAKDLAENNKGGRVLVVCSEVMLNVFRGPSLEQEDYLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSHLKLHLREMGLTFHCSKAVPSLITQNVEDYLVKAFEPFGISDWNSIFWILHP 307          

HSP 2 Score: 44.2838 bits (103), Expect = 9.131e-48
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 2
Query:  443 LHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSAC 562
            LHPGG AILD+VE           A+R VLSE GN++SAC
Sbjct:  305 LHPGGIAILDRVEEKLGLEPEKLRASRDVLSESGNLTSAC 344          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: DPSS_PINSY (Dihydropinosylvin synthase OS=Pinus sylvestris PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 105/229 (45.85%), Postives = 139/229 (60.70%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP--RWARNSGPSGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR  ++Q GCFAGGTVLR+AKDLAENN+GARVLV+CSE TAVTFRGP++THLDSLVGQALF            P   VE+  +++V T+QT++P+S+GAI G +REVGLTF L   VP LIS NIE  + EAF+   ISDWN +FW+  P  R   +   + +   P +     H  S      ++   C+       ++    +      +GL     FGFGPGLT++
Sbjct:  158 KRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMS---EYGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLFGFGPGLTIE 383          
The following BLAST results are available for this feature:
BLAST of CF417078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
THS2_ARAHY3.841e-5151.50Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
THS3_ARAHY1.118e-5051.09Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1[more]
CHSC_IPOPU1.316e-4956.38Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
DPS2_PINST2.753e-4949.34Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=... [more]
2PS_GERHY3.595e-4946.722-pyrone synthase OS=Gerbera hybrida GN=2PS PE=1 S... [more]
DPS1_PINST1.046e-4848.91Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=... [more]
CHSY_EQUAR1.046e-4849.38Chalcone synthase OS=Equisetum arvense GN=CHS PE=2... [more]
VPS_PSINU6.785e-4846.41Phloroisovalerophenone synthase OS=Psilotum nudum ... [more]
CHSA_IPONI9.131e-4856.38Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]
DPSS_PINSY3.721e-4645.85Dihydropinosylvin synthase OS=Pinus sylvestris PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-008 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417078 ID=CF417078; Name=CF417078; organism=Citrus sinensis; type=EST; length=708bp
AAGCGCTTCATGATGTACCAACAAGGATGTTTCGCCGGCGGCACTGTTCT
TCGCCTCGCTAAAGACTTGGCTGAGAACAACAAGGGCGCTCGCGTTCTTG
TTGTCTGTTCGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACT
CATCTTGATTCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGC
TGTGATCGTGGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATC
AGCTCGTGTCGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATT
GACGGACACTTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGT
CCCCGGCTTGATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCG
CCCCGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCCACCC
CGGTGGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAG
GGGAGAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATG
TCAAGCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGT
TGAGGAAGCGAAAGCCACCCACCGGCGAAGGGCTTGNNTGGGGTGTGCTG
NTTCGGGTTCGGGCCGGGGCTCACCGTCCAAGACCGTTGTGCTGCACAGT
GTCCCCAT
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