CF417078

Overview
NameCF417078
Unique NameCF417078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:516..1219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSG_PETHY (Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 108/232 (46.55%), Postives = 139/232 (59.91%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPA--DT-HLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TG--PQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTVQ 681
            KR MMYQQGC+ GGT LRLAKDLAENNKGARVLVVC EIT ++F+ P+  DT  LD LVGQALF            P  ++E+PL++LV  +QT++PDS   I  +L E GL  HLLKD P +IS+NIE+ L E F PLGISDWNSIFW+A P          +  G  P++  A  H  S      ++   C++    + ++           +GL     FGFGPGLT++
Sbjct:  155 KRSMMYQQGCYGGGTALRLAKDLAENNKGARVLVVCVEITVMSFQAPSRNDTDELDVLVGQALFADGASAVIIGSDPILAIEKPLFELVFATQTLIPDSGHVICANLTEAGLIPHLLKDAPIVISQNIERRLVEVFKPLGISDWNSIFWVAHPGGPAILNQIELKLGLKPEKLRAARHVLS---EYGNMSSACVLFVLDEMRKGTIEKGMGTTGEGLEWGLLFGFGPGLTIE 383          

HSP 2 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 42/86 (48.84%), Postives = 49/86 (56.98%), Query Frame = 2
Query:  446 HPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATHRRRAXXXXXXXXXXXXXXXKTVVLHSV 703
            HPGGPAIL+Q+E           A R VLSEYGNMSSACVLF+LDEMRK ++E+   T                    +TVVLHSV
Sbjct:  306 HPGGPAILNQIELKLGLKPEKLRAARHVLSEYGNMSSACVLFVLDEMRKGTIEKGMGT-TGEGLEWGLLFGFGPGLTIETVVLHSV 390          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: BBS_PHASS (Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.940e-44
Identity = 109/231 (47.19%), Postives = 135/231 (58.44%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP--RWARNSGPSGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESH-PPAKGLXGVCXFGFGPGLTVQ 681
            +R M+YQQGCFAGGT LRLAK LAE+ KGARVLVVC+E T V FR P++ H D LV QALF            PD +  ER  + +VSTSQ +LPDS GAI GH+ E GL   L +DVP ++SKN+ K L EAF P GISDWNSIFW+  P  R   +     V   P++     H  +      ++  +C VH   DE      +E      +GL     FGFGPGLTV+
Sbjct:  155 ERVMLYQQGCFAGGTTLRLAKCLAESRKGARVLVVCAETTTVLFRAPSEEHQDDLVTQALFADGASAVIVGADPDEAADERASFVIVSTSQVLLPDSAGAIGGHVSEGGLLATLHRDVPQIVSKNVGKCLEEAFTPFGISDWNSIFWVPHPGGRAILDQVEERVGLKPEKLSVSRHVLA---EYGNMSSVC-VHFALDEMRKRSANEGKATTGEGLEWGVLFGFGPGLTVE 381          

HSP 2 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 42/87 (48.28%), Postives = 46/87 (52.87%), Query Frame = 2
Query:  446 HPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATHRRRAXXXXXXXXXXXXXXXKTVVLHSVP 706
            HPGG AILDQVE            +R VL+EYGNMSS CV F LDEMRK+S  E KAT                    +TVVL SVP
Sbjct:  304 HPGGRAILDQVEERVGLKPEKLSVSRHVLAEYGNMSSVCVHFALDEMRKRSANEGKAT-TGEGLEWGVLFGFGPGLTVETVVLRSVP 389          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPU (Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.259e-42
Identity = 101/231 (43.72%), Postives = 133/231 (57.58%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPPRWARNSGPSGV*TGPQRG---EAEGHTSSVE*VR*H--VKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTV 678
            KR MMYQQGC AG  +LRLAKDLAENNKG RVLVVCSE+    FRGP+    D+L+ Q LF            P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI  P      G + +  G +     E E   +S + +  +  +   C++    + ++     E     +GL     FGFGPGLT+
Sbjct:  161 KRLMMYQQGCNAGAAMLRLAKDLAENNKGGRVLVVCSEVMLSVFRGPSLQQEDNLLAQCLFGDGAAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNVEDCLVKAFEPFGISDWNSIFWILHP------GGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLFILDEVRKKSKKDEQMTTGEGLEWGVVFGFGPGLTI 385          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSB_IPOPU (Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.261e-42
Identity = 98/228 (42.98%), Postives = 134/228 (58.77%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAPP--RWARNSGPSGV*TGPQRGEAEGHTSSVE*VR*HVKRLCLVHP*RDEKEVC*GSESHPPAKGLXGVCXFGFGPGLTV 678
            KR MMYQQGC AG  +LRLAKDLAE+NKG RVLVVC+EIT   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  K VP ++++N+E  L +AF P GISDWNSIFW+  P      +     +  GP++  A     S      ++   C++    + ++     E     +GL     FGFGPGLT+
Sbjct:  161 KRLMMYQQGCNAGAAMLRLAKDLAESNKGGRVLVVCAEITINIFRGPSLEQDDNLLAQCLFGDGAAAMIVAADPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSKAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRVEERLGLGPEKLRASRDVLS---EYGNLTSACVLFILDEMRKKSKKDEQMTTGEGLEWGVVFGFGPGLTI 385          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: CHSY_FRAAN (Chalcone synthase RJ5 (Fragment) OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 44/86 (51.16%), Postives = 49/86 (56.98%), Query Frame = 2
Query:  446 HPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATHRRRAXXXXXXXXXXXXXXXKTVVLHSV 703
            HPGGPAILDQVE+          ATR +LSEYGNMSSACVLFILDE+R+KS      T                    +TVVLHSV
Sbjct:   13 HPGGPAILDQVEAKLALKPEKLEATRHILSEYGNMSSACVLFILDEVRRKSAANGHKT-TGEGLEWGVLFGFGPGLTVETVVLHSV 97          
BLAST of CF417078 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.700e-11
Identity = 34/126 (26.98%), Postives = 58/126 (46.03%), Query Frame = 1
Query:    1 KRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIE 378
            +R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G    L   +P +I   IE
Sbjct: 2921 ERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIE 3043          

HSP 2 Score: 40.4318 bits (93), Expect = 1.700e-11
Identity = 20/50 (40.00%), Postives = 27/50 (54.00%), Query Frame = 2
Query:  443 LHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRK 592
            +H GG +IL  +E+           T  V   YGNMSSA V+F++D  RK
Sbjct: 3070 IHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHARK 3119          
The following BLAST results are available for this feature:
BLAST of CF417078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
CHSG_PETHY9.164e-4546.55Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=... [more]
BBS_PHASS5.940e-4447.19Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 ... [more]
CHSA_IPOPU3.259e-4243.72Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE... [more]
CHSB_IPOPU7.261e-4242.98Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE... [more]
CHSY_FRAAN1.084e-1351.16Chalcone synthase RJ5 (Fragment) OS=Fragaria anana... [more]
PKS1_DICDI1.700e-1126.98Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-008 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417078 ID=CF417078; Name=CF417078; organism=Citrus sinensis; type=EST; length=708bp
AAGCGCTTCATGATGTACCAACAAGGATGTTTCGCCGGCGGCACTGTTCT
TCGCCTCGCTAAAGACTTGGCTGAGAACAACAAGGGCGCTCGCGTTCTTG
TTGTCTGTTCGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACT
CATCTTGATTCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGC
TGTGATCGTGGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATC
AGCTCGTGTCGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATT
GACGGACACTTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGT
CCCCGGCTTGATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCG
CCCCGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCCACCC
CGGTGGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAG
GGGAGAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATG
TCAAGCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGT
TGAGGAAGCGAAAGCCACCCACCGGCGAAGGGCTTGNNTGGGGTGTGCTG
NTTCGGGTTCGGGCCGGGGCTCACCGTCCAAGACCGTTGTGCTGCACAGT
GTCCCCAT
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