CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   28 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 354
            F  E +I   KGT  G   T +EG ++ + +  P +YPFKPPK++F+T  +HPN+  + G ICLDIL++ WS    +++ L+S+Q+LL  P  + P +++ AQ +    E
Sbjct:   26 FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRE 135          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.448e-17
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI  FP E+++   + TI+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W++   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.448e-17
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI  FP E+++   + TI+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W++   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL----WSNQEEYRKMVEKLYKPPS 393
            G+  FP E +I   + TI+G   T +EG ++++ LS   D+P  PPK  F T  FHPNV   G IC++ L+  W +   ++ ILL+I+ LL  PN  S LN +A +L    + N  E  +M+ +++  P+
Sbjct:   32 GVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHAKPT 161          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI  FP E+++   + TI+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W++   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI  FP E+++   + TI+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W++   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   16 GISAFPEED-----NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMV 369
            G+ A P ++     N+   +  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  ++ EY K V
Sbjct:   23 GLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRV 148          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 41/116 (35.34%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   28 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA-QLWSNQEEYRKMVE 372
            FP  ++I  ++ T++  +   ++G E+R S     ++P +PPKVK     +HPN+D+ GN+CL+IL++ W     +  +++ +Q L  EPN S PLN  AA Q+ +N+EE+++ V+
Sbjct:   46 FPSAEDIMNFELTVRPDEG-FYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   16 GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 357
            GI  FP E+++   + TI+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W++   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   30 GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   37 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEK 375
            E+N+  W   ++G  DT +EG  ++  ++FP +YP++PPK+ F +  +HPN+   G +C+ IL           WS A  + T+LLS+ SL  EPN  SP N  AA      + YRK++ K
Sbjct:   27 ENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAA------KSYRKLMHK 141          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC1_YEAST8.487e-1838.18Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2S_HUMAN1.448e-1740.00Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BOVIN1.448e-1740.00Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBE2S_BRAFL1.891e-1736.15Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBE2S_RAT2.469e-1740.00Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_MOUSE2.469e-1740.00Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBC9_PAGMA2.469e-1739.68SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC12_YARLI2.469e-1735.34NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UB2SA_XENLA2.469e-1740.00Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBC_ASFK53.225e-1736.36Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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