CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417094_ssr461 microsatellite CF417094_ssr461:461..472. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 339
            SA P  +++F W+ TI G  ++ + G  + +++ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:   22 SAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 384
            SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++  +  K
Sbjct:   82 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTK 203          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 384
            SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++  +  K
Sbjct:   82 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTK 203          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 384
            SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++  +  K
Sbjct:   82 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTK 203          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 384
            SA P+ DNI+ W+ TI G   +V+EG  + L ++F  +YPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   68 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 189          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.549e-22
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKMVEKLYK 384
            SA P+ DNI+ W+ TI G   +V+EG  + L ++F  +YPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M  +  K
Sbjct:   68 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK 189          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 58/140 (41.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    4 SGDSGISAFPE-EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEKL 378
            +G  GI+A P  ED+ F W   IQG   T FEG  Y  +L FP+DYP  PP +KFE   FHPNV   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A ++W  ++EEY ++V +L
Sbjct:   20 NGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRL 159          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.679e-22
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   13 SGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 354
            S  SA P  D+++ W+ +I G  D+ + G  + LS+ FP DYP KPPK+   T  +HPN++  GNICLDIL+D+WS A  +  +LLSI SLL + N   PL  + A ++    +
Sbjct:   19 SSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRK 132          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.819e-21
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   43 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKMVEK 375
            N+F W+  I G KDT++EG  YR+ + F +D+P  PPK KFE   FHPNV   G +CL +L +   W  +  ++ +L+ IQ LL  PNI  P  ++A Q++  N+ EY K V+K
Sbjct:   37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   22 SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKM 366
            SA P+ DN++ W  TI G   +V+EG  + L + F  +YPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q   N+EE+ ++
Sbjct:  107 SAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRI 222          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC8_ARATH1.495e-2245.28Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UB2E3_MOUSE1.495e-2245.08Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN1.495e-2245.08Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN1.495e-2245.08Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E1_MOUSE2.549e-2245.08Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN2.549e-2245.08Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC7_SCHPO4.349e-2241.43Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC4_CANAL5.679e-2242.11Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC9_CAEEL2.819e-2142.11SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBCD2_DROME3.681e-2145.69Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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