CF417107

Overview
NameCF417107
Unique NameCF417107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_LACLS (50S ribosomal protein L7/L12 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD++L   G + K+ VIKEVRG TGLGLKE+KELV+  PT++K G+++ EA+ I  KL+  GA ++++
Sbjct:   55 FDVELTAAG-DKKVAVIKEVRGITGLGLKEAKELVDGAPTVVKEGLSESEANEIKEKLEAAGASITLK 121
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_LACLM (50S ribosomal protein L7/L12 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD++L   G + K+ VIKEVRG TGLGLKE+KELV+  PT++K G+++ EA+ I  KL+  GA ++++
Sbjct:   55 FDVELTAAG-DKKVAVIKEVRGITGLGLKEAKELVDGAPTVVKEGLSESEANEIKEKLEAAGASITLK 121
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_ENTS8 (50S ribosomal protein L7/L12 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:   56 FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 122
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_DESAH (50S ribosomal protein L7/L12 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ LE  G + K+ VIKEVR  TGLGLKE+K LV++ P  +K G+ K+EA+ I A+L+  GAQVS++
Sbjct:   61 FDVILEAAG-DKKIGVIKEVRAITGLGLKEAKALVDEAPKPVKEGIVKEEAEKIKAQLEAAGAQVSVK 127
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_CLOB8 (50S ribosomal protein L7/L12 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   G + K+KVIK VR  TGLGLKE+KE+V+  P  LK GV+KDEA+++ AKL EVGA   ++
Sbjct:   55 FDVVLASAG-DNKIKVIKVVREITGLGLKEAKEIVDGAPKTLKEGVSKDEAEDMKAKLAEVGATAEVK 121
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_CITK8 (50S ribosomal protein L7/L12 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:   55 FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK 121
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_YERE8 (50S ribosomal protein L7/L12 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            F++ L  +G + K+ VIK VRG TGLGLKE+K+LVE  P +LK GV KDEA+++   L+E GA V ++
Sbjct:   56 FNVVLASFG-DNKVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVNKDEAESLKKSLEEAGAAVEIK 122
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ LE + A AK+KV+K VR  TGLGL ++K LVE  P  +K G++KDEA+ +  +++EVG +V+++
Sbjct:   64 FDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEIEEVGGKVTLK 131
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_SHIFL (50S ribosomal protein L7/L12 OS=Shigella flexneri GN=rplL PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:   55 FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK 121
[Close]
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_SHIF8 (50S ribosomal protein L7/L12 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplL PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L+  GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:   55 FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK 121
The following BLAST results are available for this feature:
BLAST of CF417107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RL7_LACLS2.195e-1150.0050S ribosomal protein L7/L12 OS=Lactococcus lactis... [more]
RL7_LACLM2.195e-1150.0050S ribosomal protein L7/L12 OS=Lactococcus lactis... [more]
RL7_ENTS82.195e-1152.9450S ribosomal protein L7/L12 OS=Enterobacter sakaz... [more]
RL7_DESAH2.195e-1152.9450S ribosomal protein L7/L12 OS=Desulfobacterium a... [more]
RL7_CLOB82.195e-1154.4150S ribosomal protein L7/L12 OS=Clostridium beijer... [more]
RL7_CITK82.195e-1152.9450S ribosomal protein L7/L12 OS=Citrobacter koseri... [more]
RL7_YERE82.867e-1151.4750S ribosomal protein L7/L12 OS=Yersinia enterocol... [more]
RL7_SYNPX2.867e-1147.0650S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_SHIFL2.867e-1152.9450S ribosomal protein L7/L12 OS=Shigella flexneri ... [more]
RL7_SHIF82.867e-1152.9450S ribosomal protein L7/L12 OS=Shigella flexneri ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-037 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_D5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417107 ID=CF417107; Name=CF417107; organism=Citrus sinensis; type=EST; length=607bp
GGAACAAATTGGGAATTAAAGAAATGCCGAACATGTGCGTAATGATGCCC
GGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGAGGAGGAACTGGGAC
CGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTTCGATTTGAAGCTGG
AAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTAAGGAAGTTAGAGGG
TTTACGGGTTTGGGGTTGAAAGAGTCTAAAGAGTTGGTGGAGAAAGTTCC
CACGTTGTTGAAAAGGGGCGTTACCAAAGACGAGGCTGACAACATTGTTG
CTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGGAGTGAGCTTGACTT
TATCAGAGGAGTGAATGATGAAGAACTTGAAGTCAAGACTTTGGAACTAT
GGCTAGTTAATATCAAAAGGATCCGATTCCGATCAATATCATTCTTCAAC
TATCTGCATGTGAGGGTGATAAACGCATGTCTTTCATAATACACAACATT
CATTGATAAAGCTAGTTTGTTGCGTTCCCAAATAGAATCATTTTACACAA
ACTGGCCTTTATTTTTAAAATTTCATACAACTTCTGTAGAACTGATTTCT
GATGACG
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